CI01000021_04886787_04893309 (PLAGL2)


Basic Information

Item Value
gene id CI01000021_04886787_04893309
gene name PLAGL2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 4886337 ~ 4893474 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_04886787_04893309.mRNA
ACATAAAAAAGGGTAAGCACTGTTTTTAGCTGTCTCCCTGCATGTAAGAAAAATCGGTAGCACTTTATTTTACAGTCCTGTTCCCCATGTACATAATATGTACTTATTACAGTAATTACAATAACCGGGTACTAACTCTGAATCTACCCCTAAACCTAACCTTAACCCATGTAGTTACCTTATATTACCCAGTACTTTCTTAGGTAAGTACACGTAAGTGAACATATTATAAATTAAAGTGCAACTGAAAAATCATAAATGAACATGCTTAAAAAATATCTGCTTCACCTTGTCATGTTTGTTTATTTATTTTTGTTTTCACATATTGTACAGATAGCAGACAGTTTAAGAGCCTGAATCCCCTTAAATACCACCGTGACATCGAACCAGAGCCTGGAAGGCAGGGCAGCCACGGCCGAGTTTCAATGGCAACGGCACCCTAGGGCTGCCATGGCAGCAGCTGCCGCCGATGCCCCACACCACATTGCCACACTGACGCTGGAGGACGAGGATCGACGAGGCGCCACCAAAGTGTTTGGAGGAGAGAAACCTTTCCACTGTTCCCAGCCCCATTGTCCTAAGGCTTTCAGCTCCAAATATAAGCTCTTTAGGCATATGGCCACACACTCCCCACAGAAGACTCACCAGTGCTCGTTTTGTGAAAAGATGTTTCACCGCAAAGATCACCTGAAAAACCACCTGCAGACTCACGACCCCAACAAAGAGGCCTTTAAGTGCGAGGAGTGTGGCAAACACTATAACACAAAGCTGGGCTACAAGCGCCACATGGCTATGCACTCAGCCACAGCCGGTGATCTTACCTGTAAGGTGTGCTTGCAAAGCTACGAGAGCACGCCTGCACTCTTGGAGCACCTCAAGAGCCACTCAGGCAAGTCTTCAGGTGGAGCCAAGGAGAAGAAACATCCCTGTGACCACTGTGATCGTCGCTTTTACACACGAAAGGATGTTCGCCGACACATGGTGGTACACACGGGACGCAAAGACTTCCTGTGCCAGTACTGTGCCCAACGTTTTGGGCGGAAGGACCATCTGACGCGACACGTCAAGAAGAGTCACTCGCAGGAGCTGCTGAAGATCAAGACGGAACCTCCGGATATGTTGGGTTTACTTGGGTCTGGTTCTCCACCTTGTGCTGTGAAAGAAGAAATAAGCCCTATGATGTGTAGCATGGGACCTACCAAGGACTCGATGATGGCAAAGCCCTTCCACGGTGCCACCCCTTTTCCCATGGGCATGTACAACCCTCATCATCTCCAGGCCATGTCCAATCCGGGTGTGGGCCACCATCACTCATTGAACCAGCAACAGCAGCACCCACAGCCACCGCCCAAGTACCAGCTCGGATCTACCTCATACTTGCTGGAGAAGCCCCTGAAGGTGGAGATGGAGAGCTTCCTGATGGATCTTCAGAGTGGACTCCCAGTTCCTCCGCCACCCTCTGCTGACCCTCACTCAGCAGCTTCGCCCAATAAGGAGGGTTTGGAACCTCCGGTGGGATTGTCGGATGACCTTTGCGGGGACCCCCTCATGTCCAAGAGCCCCGCTGTCATTGCTGAGTCTTTGTGTGCTGCTAACATGGACTTTTCTCACCTGCTGGGCTTTATTCCACTAAATCTGCCACCCTATAGCGCCCCCATGAGTTCAGGAGGACTGCATCTTCGCATGCTGCCGAACCACACGCTGCCTCGGCCACAGCTGCATTGCCTCTTACCTCTTTGCAACCTCAACCTCAGGAGCAGCCAGGCTCCGGTGGGGGGCTCGGTCTTGGGCCTCTGCACCCACTCCCACCAGTGTTCAGCTCTAGCCTCAGTACGACCACACTGCCTCGCTTTCACCAGGCCTTTCAATGAGGTCCCCACACCAACCTGGCCTGTCACACGGGCTCAGGGCAGAGGAGCATTAGTGCTCCCCATAGGTGTGGTGAATGTGAATCTCACAAGCAGGAAAGACAATAGAAAGGACCTCAAAACAGCACAACGCATCACCTCATTTATTTGTTTTTCATACCAAAAACCTGGGGAGAAGAAACTTCTTTTTGCACAATTGCTACTTAAAGAGGAATTGAGTTAGTTTTGTTTATACTGTAAGAATGATTTCTCAAAATAATTGTTTCATAACAAAGCCAAAAATATTAAGTTGTCCCAACGTTCTACTCTCATATTCATTTATAAAAGTCATTAATGGACTTTTGTCCAAAAATACATTTTTTAAATTTAATTAAAAAAGTTAGAGGAA

Function

symbol description
plagl2 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including axial vasculature; immature eye; lateral plate mesoderm; nervous system; and otic vesicle. Orthologous to human PLAGL2 (PLAG1 like zinc finger 2).

NR:

description
pleiomorphic adenoma protein-like 2, partial

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19486 PLAGL2; zinc finger protein PLAGL2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_04886787_04893309.mRNA False 2256 mRNA 0.48 7 4886337 4893474

Neighbor

gene id symbol gene type direction distance location
CI01000021_04795987_04803001 PCMTD2 coding upstream 83233 4795987 ~ 4803104 (+)
CI01000021_04763908_04787185 MYT1B, MYT1 coding upstream 98370 4763908 ~ 4787967 (+)
CI01000021_04755472_04758504 NA coding upstream 127683 4755472 ~ 4758654 (+)
CI01000021_04614553_04621970 NA coding upstream 263909 4613765 ~ 4622428 (+)
CI01000021_04576127_04585164 NA coding upstream 301026 4576127 ~ 4585311 (+)
CI01000021_05050240_05098803 NA coding downstream 155446 5048920 ~ 5102550 (+)
CI01000021_05193252_05204766 SLCO4A1 coding downstream 299309 5192783 ~ 5205113 (+)
CI01000021_05244908_05282588 NTSR1 coding downstream 351257 5244731 ~ 5282927 (+)
CI01000021_05302737_05307812 NA coding downstream 408869 5302343 ~ 5308673 (+)
CI01000021_05392788_05403219 NA coding downstream 498828 5392302 ~ 5404100 (+)
G118438 NA non-coding upstream 4251 4853155 ~ 4882086 (+)
G118459 NA non-coding upstream 155020 4731100 ~ 4731317 (+)
G118450 NA non-coding upstream 169842 4716292 ~ 4716495 (+)
G118416 NA non-coding upstream 224764 4661338 ~ 4661573 (+)
G118409 NA non-coding upstream 246117 4639927 ~ 4640220 (+)
G118434 NA non-coding downstream 829 4894303 ~ 4895695 (+)
G118444 NA non-coding downstream 11993 4905467 ~ 4913042 (+)
G118493 NA non-coding downstream 56883 4950357 ~ 4950626 (+)
G118499 NA non-coding downstream 67128 4960602 ~ 4960918 (+)
G118503 NA non-coding downstream 68941 4962415 ~ 4962716 (+)
G117493 NA other upstream 850661 4033000 ~ 4035676 (+)
G117484 NA other upstream 928585 3956146 ~ 3957752 (+)
G117202 NA other upstream 1558104 3269144 ~ 3328233 (+)
G117237 NA other upstream 1642973 3237854 ~ 3243364 (+)
G116236 NA other upstream 2589142 2289817 ~ 2297195 (+)
G119701 NA other downstream 1906670 6800144 ~ 6860606 (+)
G118405 NA non-coding upstream 208797 4633502 ~ 4633936 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1405605 LOC106566425 unknown NC_048580.1 CM023234.2 70129921 ~ 70132301 (+)
bowfin (Amia calva) AMCG00008052 NA coding CM030123.1 CM030123.1 40669670 ~ 40677744 (-)