CI01000021_05193252_05204766 (SLCO4A1)


Basic Information

Item Value
gene id CI01000021_05193252_05204766
gene name SLCO4A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5192783 ~ 5205113 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_05193252_05204766.mRNA
TCTTAAAAAGGAGACAGGAAGGCTTTGGCACAAAACAGGAGTGCAGTGTGAGTTTGGTATGTGAGGTGTTTTTTTTCTAAAAAGAGTGTTTAATGGGCAATGGATGGCATGCAGAACTAATCCCAGCTCATTACAGTTTTTGGGGTCTGTTTGGATGTCACAGTTGACTTCTTAATGAGAAAAAAACTTTGCTTTTGGAGCTAAATAAGTTGATGATATACTGAGGATTTACTGAAGTTGGCGACAAACTTATTGAGTGTTTCTTTCTCCGTCTTTTTTGCAGAATTAAGCTTTCCAAGATCTTTATGACTTCAGTTTAAACTCTACGAAACTCTGTAAAGGGATCTTTGTCCAAAGACTGCCATCGAATCACTCTCCAAAACTACACATAGAATCAGTGTTTCCTGTGGAAACGTTTTATTTTCTTATCCTTCACAAAGTTTGTCACAGCACCCCCCCTTTTGGGGCCATGCCCCACCTGTTAAACAATGACACGTCCTTCAGCTCCAAGCAAGAGCTTCTGGTCCTACATGACAGTCCACTGGGACCCGGTCCAGGCACTCCCAGCCCTGTGGAGTCCCATGACTCTGGGCCTGGCAGCCCAGCTGGAAATGCACACACTGTGTTCCACAATACAGGCAAACGGGGGCTTGAGCTCAAAGAGCCTCCCACTGGGGTGAAATTTGTCCCAACGGTCTCTGAGAATCTTTGTGGATGGGGTGCACTGACCCCACGGTGTATCCAGACCTTCAACACCCCACGCTGGCTTCTCTTCTTCCTATGTGTAGCCTCCTTCCTCCAGGGCATGATAATCAACGGCTTCATCAACACTGTCATCACCTCCATCGAGAGACGTTTTGATCTACGCAGCTACCAGGCGGGACTTATCGCGAGCTCCTACGACATTGCTGCTTGTGTGTGCCTGACATTCGTGAGCTACTTTGGTGGTACGGGTCATAAGCCTCGATGGCTGGGCTGGGGTGTGCTCATCATGGCACTGGGGTCTCTGGTCTTTGCCCTGCCCCATTTCACCACACCTCCCTATGAGGTGAGAGTATCTGAGCGCATGGGATTGTGCTCGGCCAATCACACAGAGACATGTGTCAGTGACGAAGGTGGGCTGTCAGCGTACCGTTATGTCTTTATGCTGGGCCAGTTTCTTCATGGGGTCGGGGCAACCCCTTTGTACACCCTCGGGGTCACCTACCTAGATGAGAACGTCAAGTCAAACTATGCTCCTGTATATATAGGGATCTTCTACACAGCTGCCATTGTAGGACCTGCGGCCGGTTACTTGCTGGGTGGATTCTTTCTCAACATTTACACAGAGATCGACCAAACGACAAAGCTGACTCCTGAAAACCCACTGTGGGTGGGAGCTTGGTGGATTGGTTTCCTGGCAGGAGGGGCGGCAGCTCTGGTTATCGCTCTGCCTATACTGGGTTACCCACGGCAGCTACCAGGCTCTCAGCGATATGTGGCCATGCGTGTCTCAGAGGCCCACCAGCTGAAGGATGGCAGTCAGGTCACTGCATCTGATCCTCAGTTTGGAAAAACAGTAAAGGACATGCCCAGGTCAATGCTGCTTCTTTTAAAGAACCCTACTTTCATCTTTCTATGTCTTGCTGGTGCTACAGAGGCCACGCTCATAGCTGGGATGTCCACGTTTGGCCCCAAATTTCTCGAGTCTCAGTTTAGTCTGAGTGCTTCAGAAGCAGCAACCTGGTTTGGGTATATGGTGGTACCAGCTGGTGGAGGTGGCACCTTCCTGGGTGGCTTCATTGTAAAGAAGCTGAACCTTCGTTGCCGTGGTATAATCCGTTTTTGCATGCTGTGTGCAGTGGTCAGCCTGATGGCTATCTTCATATTTTTGGTACACTGTCCTAATGTGCCCATGGCAGGAGTAACTGCCCCATACTACAGCAACTTCACACACAACCACTACAGCGCCCCCTACCAGCAGACAGAAATCCACAACAGCAGCTCCTCAGATCTGGGCAATCTGACCGTAAGCTGTAACATTGGATGTCACTGTGTTGAGCAGTTGTTTAACCCCGTGTGTGGTGCGGATGGAGTGATGTATTTCTCTCCCTGCCATGCCGGCTGCAGCTCCCTCAACCACACATACAGCCCCAGAGGCAGAAAGGTGTTCTCCAGCTGCAGCTGTGTGGTAGGGAATATATCATGGGGAGAACAAGGTTTTGCTGAAGAAGGGAGGTGTGTGTCATCCTGCAATCACATGCCAGCCTTCCTCACCTTCCTCTTCGTCATCATCTTCTTCACTTTCCTCTGCAGCATCCCTGCACTTACTGCCACACTCAGGTGTGTTCCTGACAGTCAGAGATCGTTTGGACTTGGAATCCAGTGGATCGTGGTAAGGACTCTCGGTGGGATCCCAGGCCCCATAGCGTTCGGCTCAGTGATTGACATCTCCTGTCTGCTGTGGGAGGAGCAGTGTGGAGAATACGGTTCTTGTTACCTGTACCACAACTCAGCCATGAGCCAGTACTCGCTCATTGCAGGCATCATTTACAAGGTTTTAGGCACTTTCTTTTTCTTGCTGGCTGCCCTGCTCTACCAGCCGCCCCCTGAGTCTCCTCAGAGCAGCTGTGAGAGCACAGATGTGGGAGGAGACAGAGACCTGCCAATCAAAGACCTCCCCCCTGAGATCATCTCCAACCCGCATGCCAAATTATGACCTCAGTCTTCAAATACACTGACACCTCACCTCAAATTGTGCATATATGCGTCTGTGTGTGTGTGTGTGTATAAGGTCAATACCATCACTGTTCACTGTGCCCCGTCCCTCCGGCTGTACATTGTTCCCAACGTGCATCTGTGATATATTCTCATATACTCTCATTGCTCACCAGCCTAAAACTCCCAAGAACTGAAAGCATCTATGTCACAATGAAAGACCAAAGGTCAGAGGTGAAATCAGAGCATACAGTATGAGTTACATAAACAGTACCTATCAAAAGCAAACATAATCTTAATTTGAGAATAGATTATGCATTCAAACTGATATTTATATAATTTAAATGA

Function

symbol description
slco4a1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLCO4A1 (solute carrier organic anion transporter family member 4A1).

GO:

id name namespace
GO:0015349 thyroid hormone transmembrane transporter activity molecular_function

KEGG:

id description
K14354 SLCO4A; solute carrier organic anion transporter family, member 4A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_05193252_05204766.mRNA True 3045 mRNA 0.49 11 5192783 5205113

Neighbor

gene id symbol gene type direction distance location
CI01000021_05050240_05098803 NA coding upstream 92984 5048920 ~ 5102550 (+)
CI01000021_04886787_04893309 PLAGL2 coding upstream 299309 4886337 ~ 4893474 (+)
CI01000021_04795987_04803001 PCMTD2 coding upstream 389679 4795987 ~ 4803104 (+)
CI01000021_04763908_04787185 MYT1B, MYT1 coding upstream 404816 4763908 ~ 4787967 (+)
CI01000021_04755472_04758504 NA coding upstream 434129 4755472 ~ 4758654 (+)
CI01000021_05244908_05282588 NTSR1 coding downstream 39618 5244731 ~ 5282927 (+)
CI01000021_05302737_05307812 NA coding downstream 97230 5302343 ~ 5308673 (+)
CI01000021_05392788_05403219 NA coding downstream 187189 5392302 ~ 5404100 (+)
CI01000021_05451019_05481032 NA coding downstream 245906 5451019 ~ 5481196 (+)
CI01000021_05524969_05530651 LSM14B coding downstream 319703 5524816 ~ 5531032 (+)
G118807 NA non-coding upstream 27436 5161087 ~ 5165347 (+)
G118798 NA non-coding upstream 39261 5153180 ~ 5153522 (+)
G118793 NA non-coding upstream 43098 5149334 ~ 5149685 (+)
G118442 NA non-coding upstream 85243 5045231 ~ 5107540 (+)
G118891 NA non-coding downstream 83384 5288497 ~ 5288747 (+)
G118905 NA non-coding downstream 100841 5305954 ~ 5306248 (+)
G118916 NA non-coding downstream 113644 5318757 ~ 5320272 (+)
G118935 NA non-coding downstream 129014 5334127 ~ 5334340 (+)
G118945 NA non-coding downstream 134012 5339125 ~ 5339363 (+)
G117493 NA other upstream 1157107 4033000 ~ 4035676 (+)
G117484 NA other upstream 1235031 3956146 ~ 3957752 (+)
G117202 NA other upstream 1864550 3269144 ~ 3328233 (+)
G117237 NA other upstream 1949419 3237854 ~ 3243364 (+)
G119701 NA other downstream 1595031 6800144 ~ 6860606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022143 slco4a1 coding NC_007134.7 CM002907.2 7067196 ~ 7125494 (-)
bowfin (Amia calva) AMCG00008044 NA coding CM030123.1 CM030123.1 40394078 ~ 40415758 (-)