CI01000021_05451019_05481032


Basic Information

Item Value
gene id CI01000021_05451019_05481032
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5451019 ~ 5481196 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_05451019_05481032.mRNA
GACGTCGTCTCACATCGATAGAAATGCCTCACAGTCTGAGTGCTTGTGCATGACTCTGTCTAACCCTGTTGTCTCTCTCTCTCTCTCTCTGCATCCCCTACTTCCTTCTGCTGCTCTTTTAGACACATATAGCAACCTCAAAGAAGCTCCAAAGATCACGACTCAACCCGAGTCTCAAACCGCTTTCTCTCTGGATGACATCGATCTGGCCTGTGAGGCGACTGGAAACCCGAAGCCCAGATGGTCTTTCTGTTCTTGTCTCACACGAAGTTTCCGTTGGGTCAAAGATGGCAGCCAGTTTGGGGAGGTTCTGCTGGAGTCTGGAAGCCTGACAGCGAGACCAGATGAGGAGCTGAGATCGTATCAGGGCTCGTACCGCTGCTATGTGGCGAACGAGCTGGGAACAGCCGTCTCAGACCTGGTGCACCTGATCACAGAGTCCATCCCAACATTGGCCAAAGAGAAGAAGCAGAAACGAAGACTGTTTGAGGAGGGAGAAAGTACAGTCCTCTACTGTAACCCCCCGAAGAGCTCTGTCGCTCCCAAAATACACTGGATGGACACACAGTTGCACCACATTCCTCAGAATGAGCGGGTGACCATGAGTCTGGACGGAAACCTGTACTTTGCCAACTTAATAGTCAATGACAGCAGAGAAGACTACACCTGCAATGCCCACTACATCAAGGCCAGCGTCATCCTGCCTAAAGAGCCCATCGCCATCAGCGTCACAGCCTCAAATTCAGTGGCAAAGAACCGGCGGCCCCAGCTGCTCCATCCCACAGGATCCCACAGCTCTTATCTGGTGCTCCGGGGCCAAACGCTGACCCTAGAGTGTATCCCTGAGGGCCTACCGACTCCAGAAGTGCTGTGGGAACGGATAGACAGCCCTCTCTCTCCCAGCCGTGTCAGGATGCTGAAGTACGGCCGCTGGCTGCAGATTGAGAGCGTGTCGGAGGCTGATGATGGCGAGTACGTCTGCACTGCCACAAACAGCCAGGGCTCCGTCACGCATCACTACGCCGTCACAGTCGAGGCTGCTCCTTATTGGACCAAGTGGCCTGAGGACCACCTGTACGCCCCAGGAGAGACTGTGAGACTGCACTGTCAGGCTGATGGGATACCAACCCCAAATGTCACATGGAGTATCAATGGAGTTCCTATCACAGGGACAGATTTGGACACCAGACGGCATGTGAGTTCTGGGACACTGATCCTGACCAACGTTCAGTACAGCGATACAGCGATCTATCAGTGCGAGGCCACCAATAAACACGGCAATATTCTGGTCAACACACAGGTCTATGTTGTTGCACTGCCTCCTCAGATCCTGACGGCGGATGGGCTGGTGTACACGGCCACCGCAGGGAAAACCGTCCTGCTGGAGTGCCGAACCTTCGGCTCCCCGCTACCTAAAGTGGACTGGGAGATTTTTGGCACTGGTCCAGCTCATGCTAATGCTAGAATGTCTACGATGGCCGATGGAAATCTTCAGATCAGTAATGTGAGTGAAGAGGACAGCAACTTTTACACATGCTCAGTGAGAGACAGCAACAGGAGCATCAGTGCTGAGCTGGAGGTCTTGAACAGAACTAAGATTGTGGATCCTCCCCAGAATCTACAGGTTGTACGTGGAAATGATGTTGTTTTACAGTGCAAATTTACAGTGGACCACAAGTTAAAACATCCCACAATTCAGTGGAAGAAGGACGGACATAAGATCTCTGCATCTTCTAATGATGACAAGTACACTGAAGATCTCGATGGATCTCTGAAGGTCACCAATGTTCAGATGAAGGACACGGGAATCTACAGCTGTGAGATCAGCACTAAACTCGACTCAGACAGCGCCACCGGCTCAATCACCGTACAGGATATACCTGGTCCTCCTCACACTCTGGAGTTGTCTGAAAAGATGGACCGTAGTGTCACCCTATCCTGGATGCCAGGCCCTGAAAACAACAGTCCCATATCTGAATATATTATAGAGATGAAAGAGGAGCAGAATCAAGCAGGATCTTCCCGGTGGGAGGAGTTTGAGAGAGTTCCTCATGACATCAAACACCTGGAGGTCCATCTGCAGCCGTACAGCACATACCACTTCCGGATCAGCGCTGTTAATGGCATAGGACGCAGCGTGCCCAGTCCTCCCTCGGACTCGTACAGCACCCCAGCTGCCAAACCTGACATGAACCCGGAGAATGTGACGACTGTGTCTACTGATCCAAACAGTATGGTCATCACATGGAAGGAACTGGAGCGACGGCAATTTAATGGACCAGGCTTTAAGTACAAGGTCTACTGGCGTCAATCTTCAGACAAAGATCTACACTGGAAGGAAAGCAGCGTCTCAAATCCTCCGTTCATCGTGAACAACACTGGGACCTTCATCCCCTTTGAGATTAAAGTTCAGGCATCTAATGAGCTTGGTGCTGGACCAGAACCAGTTTCAAAGATCGGCCACTCGGGAGAAGACCTACCTCTGGAAGCCCCATCAGAAGTAAGAGTCGATGAGCTGAACAAAACTGCGGTCATCGTTAGATGGAGTCCAGTCAGCAGAGAATCTGTCCGCGGACAGTTATTGGGCTACAAGATCCATCTGAGAAGGAAGGGCCCCAGAACTCACAGCCGACGAAGCCTGGCAATGCGATCTCATGCCGCGGACAAGAACAGAGTGATTGAGGTTCCTGCACACAAGGAGGAGGAGGTCGTGAGCAACTTGCAGTTATACTCGAACTATACTCTGACAGTGGCACCTTTCAACAGCAGAGGTGAAGGTCCGCATTCAATGGCGTATCACTTTAGCACTCCAGAAGGCGCTCCTGGACCAATTTCATCCTTGACCTTTGAGAGCCCGTCTGAGACAGAGGTCACGCTGCACTGGGAAGCTCCACACAATCCCAATGGAGTGATCACAGGATACCTGCTGCAGTACCAAGAGATTGTGCCTGGAAGCTCCATAGAGTCCATCGATCTGCCCGCTGTTACTGAGTTCACACTGAAGGGTCTGGATCCTCAGAGCCACTACCTTTTCTACCTTAGAGCACGCAACACCGCTGGTGATGGGGAGCCTATAAAAAGGCAGGGCGCCACCCTATTGGATGGAGAACCACCATCTGTAATCAACGTGACTGCTGGAGAAACATCGGTCAACCTCAGTTGGGTGCCAGGAGACAGACATCGTAACATTGCCTTTAAATTCTGTTACCTCCAAAAAAGTGACGGTGGTGAATGCAAAGAGTCTGAGCAGGTCAACTCCACACAGGCCTTCTATCAGCTGCAGGGACTGAATCCAGGTGTTTGGTACAACCTTAAGATACTGTCCACCAACATTTCCTGGGCTTTCAAAACGAACGGACCAGAGCTGCTCGAGTTGCCCAGTAGCTTTGCGACTCAGGGCTGGTTCATTGGACTCATCAGTGCCATGATTCTGCTGCTGTTGGTGCTGCTCATTCTGTGCTACATCAAGAAGAGCAAAGGAGGGAAGTACTCAGTGAAAGCTAAAGAGGAAGGTCAGGGGGACAATGTGGCCCGAACAATAAAAGAAGGAGAGTTTGGAGAGTACAGTGATATTGAGAAGTGCTCCACCGGTCAGCCGTCTGTCTCCGAGAGCAAACGCAGCAGTACTGACAGTCTAGCCGACTATGGAGACAGTGTTGACATCCAGTTCAACGAGGATGGCTCCTTCATCGGCCAGTACAGCGGGCGCAGGGATCCACGCACTCACACCGGTCACGACAGCTCAGGCGCCACGTCTCCCATCAATCCCAACATGCCTCCACCCAGCATCAGCTTCCCCACTTCTGTGACAGGAATTCTGGGGCCAAATTAACACTCGCACGTCCTTGACCATTTAATGAGAGGCACTGATGGTATTAGACAGGATATTGATTTCAGGACAGACAGTCATTATCATATGACACGAGAAACATCATCCGCAAACACACCGTCGGCTTCACACTCACATAACGACACACATGCATCCGACAGACACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_05451019_05481032.mRNA True 3996 mRNA 0.52 26 5451019 5481196

Neighbor

gene id symbol gene type direction distance location
CI01000021_05392788_05403219 NA coding upstream 46919 5392302 ~ 5404100 (+)
CI01000021_05302737_05307812 NA coding upstream 142346 5302343 ~ 5308673 (+)
CI01000021_05244908_05282588 NTSR1 coding upstream 168092 5244731 ~ 5282927 (+)
CI01000021_05193252_05204766 SLCO4A1 coding upstream 245906 5192783 ~ 5205113 (+)
CI01000021_05050240_05098803 NA coding upstream 351220 5048920 ~ 5102550 (+)
CI01000021_05524969_05530651 LSM14B coding downstream 43620 5524816 ~ 5531032 (+)
CI01000021_05542885_05545016 NA coding downstream 60161 5541357 ~ 5545596 (+)
CI01000021_05556724_05561020 SS18L1 coding downstream 75528 5556724 ~ 5561020 (+)
CI01000021_05607950_05611874 OGFR coding downstream 126754 5607950 ~ 5612560 (+)
CI01000021_05632833_05637281 COL9A3 coding downstream 151637 5632833 ~ 5637566 (+)
G119024 NA non-coding upstream 24938 5425754 ~ 5426081 (+)
G119022 NA non-coding upstream 28734 5422057 ~ 5422285 (+)
G118950 NA non-coding upstream 110189 5340614 ~ 5340830 (+)
G118945 NA non-coding upstream 111656 5339125 ~ 5339363 (+)
G118935 NA non-coding upstream 116679 5334127 ~ 5334340 (+)
G119042 NA non-coding downstream 34010 5515206 ~ 5515433 (+)
G119043 NA non-coding downstream 35312 5516508 ~ 5516810 (+)
G118974 NA non-coding downstream 36183 5517379 ~ 5518443 (+)
G118995 NA non-coding downstream 37425 5518621 ~ 5518929 (+)
G118984 NA non-coding downstream 81009 5562205 ~ 5567107 (+)
CI01000021_04886787_04893309 PLAGL2 other upstream 561511 4886337 ~ 4893474 (+)
G117493 NA other upstream 1415343 4033000 ~ 4035676 (+)
G117484 NA other upstream 1493267 3956146 ~ 3957752 (+)
G117202 NA other upstream 2122786 3269144 ~ 3328233 (+)
G117237 NA other upstream 2207655 3237854 ~ 3243364 (+)
G119701 NA other downstream 1318948 6800144 ~ 6860606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location