CI01000021_05524969_05530651 (LSM14B)


Basic Information

Item Value
gene id CI01000021_05524969_05530651
gene name LSM14B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5524816 ~ 5531032 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_05524969_05530651.mRNA
CTATAAAGCACACTAATGAGTGAGCTGCTCCCTTACTAGAGCGAATTGTTTAGGACGGTCATGGTGCCAGTGTTGCAGGTGTCCGTTTGAACGGGGGATTTAGCCTGTGTTTGAGCCTTCTTTAATTAGCTTAAGTCGTTTAGTTTTGAGATAATGAGCAGCGGCACTCCTTACATCGGCAGTAAGATCAGTCTGATCTCTAAAGCTCAGATTCGCTATGAGGGAATATTATACACTATTGACACTGATAACTCGACCGTGGCCCTGGCGAAAGTGAGGTCTTTTGGAACAGAGGGGCGACCCACGGACCGGCCTGTGCCACCGAGGGACGAGGTCTTCGAGTACATCATCTTCAGAGGAAGTGACATCAAGGATATCACGGTCTGCGAGCCTCTGAAGATTCACCACAGTCTTCCTCAGGACCCTGCTATTGTTCAGGGCAGCTACAGCCCGTACAGAAGCATGCTGCCCTCCTACAGCCAGCTGGCGGCCAGCTCTCTCCTCAACCAGCAGTACGCAGCGGCGCTGGGCCTCGGTTTGCATGGTGTTCCGGTGCGGAGGGGTCCAATGGTTGAGCAGGCTGTTCAGACTGTGCCTGCAGAGAAAACCACACAGAAGGGTTTGACCGGCGCGCAGCAGCAAGGTGGAGAGACGGGCCGAGCGCAGAGGGGTGTCCGAGGAGCCCAGAGAGCTGCTGCCTTCAGCGGTGATTCATCTGCACAGCCGGGCGTCTTGAAGGGACCGAGTCAAGCTAATGACGAGAACAAGCCTCCAACCAGTCGCAGAAAACCGGGAACTCGCCGGTCCAGGAACCGCGGTCGAGGTCAGATCCTTGTAGGCAGCACGAAGCCCAGCACTCTGCAGTTTGAGTCGGACTTTGATTTTGAAACGGCAAATGCTCAGTTTAATAAAGATGACCTGGAGAAAGAGATTGAAGACAAGCTCAGTGTTGAAGAACCGAAGGAGACCCCAGAGGAAGGAAGTGATAAAGAGCGGGAGAAGCCTGAGAACGAGAGTGCCATTAAAGAGGATCCGCTCGGGCCAAAGTGCTTCTACAATAAAGCTAAATGCTTCTTTGATAACATCTCCTCAGAGCTCAAGTCCAGACGCACCACATGGGCTGAGGAGAGAAAGCTGAACGTGGAGACCTTTGGGGTGCCCGGGCGCTATCTGAGAGGCCGTGGTTTTCGGGGGACCTTCAGAGGGCGACGGGGCAGAGGGGCAGTGCAGCGTCCTCTTCCACAGAGAGTGGGCAGTGGACGGCTATGTGTTGCCTTCCTGTGGGACAGGGCTGACTTGGTCTTGTCTGAGTTTGATTCAGTGTCCAAAATCTTCAGTGGCTAATATTACTAGAATTTTTCTCGTCATCAAACAACCACATCCTGTAAAAAATGGCTGCATTGATTGTTACTTTTTCATTTGACATTAAAATGGCCTTTTTCCTTTTTGTTTCATGTATGTGAAGAACCCGCAACTTTACTATGTGAATGCACCTGAATCTATCAGTGATTGTTGCATTTGAATTGGGATAGCACTTTTATTTGTATGTATGGCCAGTTATTTGGTTGTACAAATATGTATGTAGATGAAGTAGATAAACTTCAGTCTATGGTATGTGATGATCCCCAATACATTCTTATTTATTACTATAATTTTCTTTTTTTTTTTTTTTTTTTCTTTTTTTGTAAAATTGTAAGGGGATCTTGTTCTTGATGGTAATTGTTA

Function

symbol description
lsm14b Predicted to enable mRNA binding activity. Located in cytoplasm. Is expressed in kidney; liver; oocyte stage I; oocyte stage II; and ovary. Orthologous to human LSM14B (LSM family member 14B).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_05524969_05530651.mRNA True 1725 mRNA 0.49 9 5524816 5531032

Neighbor

gene id symbol gene type direction distance location
CI01000021_05451019_05481032 NA coding upstream 43620 5451019 ~ 5481196 (+)
CI01000021_05392788_05403219 NA coding upstream 120716 5392302 ~ 5404100 (+)
CI01000021_05302737_05307812 NA coding upstream 216143 5302343 ~ 5308673 (+)
CI01000021_05244908_05282588 NTSR1 coding upstream 241889 5244731 ~ 5282927 (+)
CI01000021_05193252_05204766 SLCO4A1 coding upstream 319703 5192783 ~ 5205113 (+)
CI01000021_05542885_05545016 NA coding downstream 10325 5541357 ~ 5545596 (+)
CI01000021_05556724_05561020 SS18L1 coding downstream 25692 5556724 ~ 5561020 (+)
CI01000021_05607950_05611874 OGFR coding downstream 76918 5607950 ~ 5612560 (+)
CI01000021_05632833_05637281 COL9A3 coding downstream 101801 5632833 ~ 5637566 (+)
CI01000021_05700274_05719435 NA coding downstream 169242 5700274 ~ 5720762 (+)
G118995 NA non-coding upstream 5887 5518621 ~ 5518929 (+)
G118974 NA non-coding upstream 6373 5517379 ~ 5518443 (+)
G119043 NA non-coding upstream 8006 5516508 ~ 5516810 (+)
G119042 NA non-coding upstream 9383 5515206 ~ 5515433 (+)
G119024 NA non-coding upstream 98735 5425754 ~ 5426081 (+)
G118984 NA non-coding downstream 31173 5562205 ~ 5567107 (+)
G119049 NA non-coding downstream 49138 5580170 ~ 5580441 (+)
G119072 NA non-coding downstream 149367 5680399 ~ 5680682 (+)
G119073 NA non-coding downstream 150571 5681603 ~ 5681820 (+)
G118964 NA non-coding downstream 251549 5782581 ~ 5785677 (+)
CI01000021_04886787_04893309 PLAGL2 other upstream 635308 4886337 ~ 4893474 (+)
G117493 NA other upstream 1489140 4033000 ~ 4035676 (+)
G117484 NA other upstream 1567064 3956146 ~ 3957752 (+)
G117202 NA other upstream 2196583 3269144 ~ 3328233 (+)
G117237 NA other upstream 2281452 3237854 ~ 3243364 (+)
G119701 NA other downstream 1269112 6800144 ~ 6860606 (+)

Expression


Co-expression Network