CI01000021_05302737_05307812


Basic Information

Item Value
gene id CI01000021_05302737_05307812
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5302343 ~ 5308673 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_05302737_05307812.mRNA
TTATAAGTACCGCGCGCTGACCGATTGCGCCACTGGAGCTTCTGATACATAAGGACAATACAAAACAATCTATAGGGAAGCGAACAAAAACGGACAGTTTTAAAACAATGCTAAGCTTGATTACACCAGCTCCTACCTGTAAGCCTCTCATGACTAATAATTGGCACACATTCTACCAAATATGTACCTCAATTGAAGATACCTATCAAATAAAATTCTGGGCTATCCTTTAGCTCTTGAATTCTATTTTCATTAACCATGACCATGCAGCGTTAGAAAGGTCTTTTGCATCATTCTCTGAGAATTCTTCTTAATTAATATCAGACATACAACTGATTTTTTATTTAGACCTTGAAATCTTCTGCTACCATATTGTCATTTGCTTTCTAAAACCATGCTCCAGGTGAGGCTCGAACTCACAACCTCAGCATTTCTCCGCTTTGTACTGCCTTATAAGTACCGCACGCTGACCGATTGCGCCACTGGAGCGTCAGAAACAAAGCCAAATACCAACAATCATTTGGGCATTATAGCTACTAGCGCTATAATCATGAGAGACAAAATGTTATCAAATGACATGGCCATCAATTATAAGTACAGCATGAAAACAGCAAATATGCAGCACACCATCATTGCTGACATGTCTCGCTGGGATCACACCAGGGTCATCATCAGAGGAAGTGGGGGACAACCACTCAATTTACTAAATTTACCTTTATCATTATTGTTTAAGGTTTCTGTCTCTTTAAAGCTTAGAGGTATGAAAGTAAAACAGCGATATATGATCAGTGGGATGCAGTGGTGGCAGATGGATGAGATAGTGTCCAGTCAGGTGGACATACGAGATTGGAGGCGACAGGAGGAGTTGGGCTCTATGATTTAAAGATGAGTGTTAAAGTAGGATTCCAAGAAGTCCAGCTTATTCTCCAGAGATATCACTTACAATTGCACTGTTGAGAAGAGCACCTGGAAACAAACTTGTGAAGTTAAAAAAAGGGACAGACAGAAAAAAAAAAAATGTTGCCTAAATAATGACTATTTTCAAACAGGTTTTCTAAACACACCCTCTTCTTCCATTGTTTAAAGGGTTAGTTCACACAAAAATGAAATCTCTGTCATTTATTGCTCACCCTAATGTCGTTCCCAACCTGTAAGACCTTCGTTCATCTCCGGAACACAAATTAAGATATTTTTGATGAAATCTGAGGGTATCTGAACCACACATAGGCAGCAATGTCATTGCACCTTTTGAGGTCCAGAAATGTATTAAAGACATCGTTAAAACAGTCGTGTGATGAGAATGCTTTTTGTGTGCAAAAACAAAATAAAAATAACGACTTTATTTAACGATTTGAACTGTTGTCATAGTTGATGTAGAGAAAGCAGTGCAGGCTTCCGTGTTTACGTCCAAATGTCCAATTCATTATTGGCTGGTTGAACCGGTTGAACCAGTGTAGTCACATGGACTATTTTAACGATGTCTTTCACATGGACTATTTTAACAATGTCATTTCTGGACCTCAAAAGGTGAAATAACGTTGCTGCCTATGTGTGGTTCAGATACCCTCAGATTTCATCAAAAATATCTTAATTTGTGTTCAGAAGATGAACAAAGGTCTTACGTATATGACAGGAATTTCATTTTGGGGGGAACTAACCCTTTAACAAACAGTTTGGCATGTTTTGGCAGTGCTTGTTTTTTTGTTGTTGTTGTTTTGTTTTGTTTTTTCAATAATTTAAGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_05302737_05307812.mRNA True 1744 mRNA 0.38 3 5302343 5308673

Neighbor

gene id symbol gene type direction distance location
CI01000021_05244908_05282588 NTSR1 coding upstream 19416 5244731 ~ 5282927 (+)
CI01000021_05193252_05204766 SLCO4A1 coding upstream 97230 5192783 ~ 5205113 (+)
CI01000021_05050240_05098803 NA coding upstream 202544 5048920 ~ 5102550 (+)
CI01000021_04886787_04893309 PLAGL2 coding upstream 408869 4886337 ~ 4893474 (+)
CI01000021_04795987_04803001 PCMTD2 coding upstream 499239 4795987 ~ 4803104 (+)
CI01000021_05392788_05403219 NA coding downstream 83629 5392302 ~ 5404100 (+)
CI01000021_05451019_05481032 NA coding downstream 142346 5451019 ~ 5481196 (+)
CI01000021_05524969_05530651 LSM14B coding downstream 216143 5524816 ~ 5531032 (+)
CI01000021_05542885_05545016 NA coding downstream 232684 5541357 ~ 5545596 (+)
CI01000021_05556724_05561020 SS18L1 coding downstream 248051 5556724 ~ 5561020 (+)
G118891 NA non-coding upstream 13596 5288497 ~ 5288747 (+)
G118807 NA non-coding upstream 136996 5161087 ~ 5165347 (+)
G118798 NA non-coding upstream 148821 5153180 ~ 5153522 (+)
G118793 NA non-coding upstream 152658 5149334 ~ 5149685 (+)
G118916 NA non-coding downstream 10084 5318757 ~ 5320272 (+)
G118935 NA non-coding downstream 25454 5334127 ~ 5334340 (+)
G118945 NA non-coding downstream 30452 5339125 ~ 5339363 (+)
G118950 NA non-coding downstream 31941 5340614 ~ 5340830 (+)
G119022 NA non-coding downstream 113384 5422057 ~ 5422285 (+)
G117493 NA other upstream 1266667 4033000 ~ 4035676 (+)
G117484 NA other upstream 1344591 3956146 ~ 3957752 (+)
G117202 NA other upstream 1974110 3269144 ~ 3328233 (+)
G117237 NA other upstream 2058979 3237854 ~ 3243364 (+)
G119701 NA other downstream 1491471 6800144 ~ 6860606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnai-uau_27 NA coding NC_053132.1 CM020929.1 20345048 ~ 20345141 (-)
striped catfish (Pangasianodon hypophthalmus) trnai-uau_5 NA coding NC_047606.1 CM018552.1 5302113 ~ 5302205 (-)
tiger barb (Puntius tetrazona) trnaa-ugc_74 NA coding NC_056704.1 CM032073.1 13449431 ~ 13449502 (-)
mexican tetra (Astyanax mexicanus) trnai-uau_5 NA coding NC_035901.1 CM008304.1 31211210 ~ 31211302 (-)