CI01000021_05392788_05403219


Basic Information

Item Value
gene id CI01000021_05392788_05403219
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5392302 ~ 5404100 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_05392788_05403219.mRNA
CTATTTAAAAACTGGCATGTAGTCTCTTGCCATATTTGTATGTGTGCGGGTGAGAAAATGTTTCTTGAGTGTGTGTATCAGTATATGTTTTGTGTGTTTGTTGGTACCACAACAGCAATATGGTGATAATCAAATGGAAGTTATATTTAGGTCAGATCAGAGTCTGAGTTTGCCAATTTATTGCTCCCACTAAAAAGCCTACAAAACAGAAGTTCTACAGAATAGAAGATAATCATATATAATGGCCCTAGCAATTGTATAGATTTTAAAATGTATGTTAAATGTGATGAACTAAATCTGTGGTCAGTCATGTTTTTTTTTTCTTTCCCTTTCTCCTCTCAGGTGAGTGGGAGTTCTGAACGTGGCCGTGTGTGACACGTTGCGTGCGTGATGCTGATCAGCAGAAGAAAATGTCTCTCTCCTAGCCCCTTGTTTTCCCCAGCCCATGTAACCTAGTGTGGCCCAGAAGGCCCGGGGGATTGTCCCATGAATCCAAGCCCAGACCGCAGCAAGGAGTGTCTCCCCCCAAAAAAGCGGGAGTCCCGACAGGGCTCGTCAGATCAACAAGCCCCAGAAGATGACTTCAAACCCCCTGCCCCTTTCCGAAGCCGAAGGCAGCATCACTCCACCGAGGGTCACAGAGAGAGTGGGGATCTTCTACCACCCCCTCCCCCCATGCTGCCACCTCTTCCTCTGTCATTGCCTTGGCAGGTGTCCTATACTCCCTCCATGCATCACTCGTACTTGCCGGTCCAGGTGGGAGAGCGGCGAGGGTCATCTTCGGCATCCTGGAGAGAGCCATTGTGTGGGCGGGGTATGGATGGAGGACTGGAGCATACCATTCCCCACCACTCTCGCTGGCTGAGCAGTGACATCCCCCCCATTAGTGTGCAACCACTCATCTCTGTGCCCACGTTCAAGAGTGTCTACACAGCCGAGTCCAGGGAAATGTGGTCCTACGGCCCCAGTCGGCGGGACTATAGCTCGTCTCTCTTCTCCCCCCATCTCTTTCCACAACCTACAGTTTATCCCCATGACACCCTCCCTGACAGCAGACTCAGGTACCAAGGCAGACGGCCCAATGGTGTTGATAGCCCAGACAGCAGGTCTGGACCTAGCAGAAGGTTGCCCGCTTGTGATGACTATGGGAACGACAGTGTAACCAGGTTGGATGGTCCACATGCCAATGGCAGGAGAAGACAGGAGAATACATCAAGACAGACCCTTGGAAGAGGCCTTTTGCCACGAGAGAACACAAGTTCACATTCCTCATCGTGGGACAGGGACCGTCGGGGAACACCCAAAGCTCCAATGCCCCCCTCATCAGACACAAAAACAGGAAAGGCAATCACTTCTCAGGACCATTTTGGTGTTAGTGCCTCTCAGGCTGGAGCTCAGATCTACTATGCTCTGGGGTCCCTTTGCCCTTCTGCTCAGCAGAACCCTCACGCATATCCACAACATAGTCCTTCTGTGTCCTGTTCCCCAAGGAATTCCCAGTACTCCCTGCAAAGCCAACAAAACAGCCATGGGGTTGAGACAGAATGGGATCCCTCTGCAGGGTCCTACCGCCCTCCTGTCGCTGTGCTCACTGGCCCTGACCCACCCCCTTCTGCAGTCCTACCTCATTTTGCCAAAGGTTCCCTGATTGAGCTGGCCGGTGGCCATCTGAAGAGGGTGGAGGAGCTCAAGACGGAGGATTTCTTACGGAGTGCTGACACCTTGCCTGAGTTTCACCTGAGCACCTGCACTATTCTGTTAATCTCGCCAGGACCCACTTATGGCTTCAACCACTTGCAGGTCTTACTCACAGACCGCAACACTCAGGAGCTACTCACAGTCTTAGCAGAGTATCCGTTTTTCGTCCGGGACCGCGGCTGGTCTTCCTGCAGTCCCCAGCGGAGCGCCCAGCTGTACGGCCTGCAGTGTCGTCAGCTCAGCACCGGTGACGTGTGTCTGGCCCTGACTCCCACACCTTCTTCAAGCACTCAGGTGCAGCGTGCGCACATACGTGCAGGGGCTGCGGTGGAGCACTGCGAAGAGATGGCAGAGAGGATGCCCCCTCCCCCTGCGCCTCCGTCTGCCCCAGTGCTCCAGCCTTCTTCTTCTAATTCGATAAGCGAGCGACCCCGCACCCGCAAGAGACGCTGGTCCGCCCCCGAGCTGGAGCCAGGAAGCAAGACTAGCACCCATTTACCTCAAGGCTCCAAGCTCGAGAGACGGCAGTAATGTTTCTAATCGACTTCACACCACAGGAAGGTTTAGCGACTGATTATTGGTAACCTCATCGATATAATGGAATAGCTAGTAAATTGGTCTTCTCCTGTTAAACATGATTTCAGAATGTAGAACAACATGCTAGCAAATCCCAAAATGCACAATGAGACAATCAAAAATCACTTATTTGTGATGCCTCGCACCTTTTAGTTATGCTAATCTCAAGCCTCTTTCTGCAGGGTATTTTTTTTAATCAGTATTATAACAAACTAATACTACTGGATGGAAAAAAGACAAAGTACACAATTATGGGAATATATCATTACAAGTGTTCTGTGAATATGCTAAACGAAATAGTCTACTGTTATTTTCGTAATGCAGTCTTGTTTCATGCTTATGAACTGCGTTTGTACCTTCAGTCTAGCAGGCAAGCTGAATGTATTAGCAGCCTTCAGCCAAGCTTTCAGTGTGGGGTCAATATGCTAGTTCACTTTAGCATTATACACTCCAGCCTGTTCTTACCCAGGGAAGAGACACTAATGATGGAATGAAACCAAACTCACACAAGACCCTGGGCCTGGTGTTTTTAAAGAGCGATGGTGCTAATGACATCAGAAAAGTCCTCTGGTGATATGTGGGTTTCCCTTTGACCTTTCCTTGTGACTGAGAGCAGGGAAAAATGACAGAAATCTAGTGTTTTGAACTCAGATACGGGTATATCTACTCTTGATTAAGCACACTCTATCACTTTATTTTTCTCTGATTTATTTTTTGTTGTTGTGGTTTCTCAAATAATATTTGCTGTTAGTTTTTTTTTCTTTATAAATGTTCTAAAATGCTCTAAAATTGTATATTTTTAAAGTTGTGAGACTGTAATACAATGTTCGCTAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_05392788_05403219.mRNA True 3110 mRNA 0.49 2 5392302 5404100

Neighbor

gene id symbol gene type direction distance location
CI01000021_05302737_05307812 NA coding upstream 83629 5302343 ~ 5308673 (+)
CI01000021_05244908_05282588 NTSR1 coding upstream 109375 5244731 ~ 5282927 (+)
CI01000021_05193252_05204766 SLCO4A1 coding upstream 187189 5192783 ~ 5205113 (+)
CI01000021_05050240_05098803 NA coding upstream 292503 5048920 ~ 5102550 (+)
CI01000021_04886787_04893309 PLAGL2 coding upstream 498828 4886337 ~ 4893474 (+)
CI01000021_05451019_05481032 NA coding downstream 46919 5451019 ~ 5481196 (+)
CI01000021_05524969_05530651 LSM14B coding downstream 120716 5524816 ~ 5531032 (+)
CI01000021_05542885_05545016 NA coding downstream 137257 5541357 ~ 5545596 (+)
CI01000021_05556724_05561020 SS18L1 coding downstream 152624 5556724 ~ 5561020 (+)
CI01000021_05607950_05611874 OGFR coding downstream 203850 5607950 ~ 5612560 (+)
G118950 NA non-coding upstream 51472 5340614 ~ 5340830 (+)
G118945 NA non-coding upstream 52939 5339125 ~ 5339363 (+)
G118935 NA non-coding upstream 57962 5334127 ~ 5334340 (+)
G118916 NA non-coding upstream 72030 5318757 ~ 5320272 (+)
G118905 NA non-coding upstream 86054 5305954 ~ 5306248 (+)
G119022 NA non-coding downstream 17957 5422057 ~ 5422285 (+)
G119024 NA non-coding downstream 21654 5425754 ~ 5426081 (+)
G119042 NA non-coding downstream 111106 5515206 ~ 5515433 (+)
G119043 NA non-coding downstream 112408 5516508 ~ 5516810 (+)
G118974 NA non-coding downstream 113279 5517379 ~ 5518443 (+)
G117493 NA other upstream 1356626 4033000 ~ 4035676 (+)
G117484 NA other upstream 1434550 3956146 ~ 3957752 (+)
G117202 NA other upstream 2064069 3269144 ~ 3328233 (+)
G117237 NA other upstream 2148938 3237854 ~ 3243364 (+)
G119701 NA other downstream 1396044 6800144 ~ 6860606 (+)

Expression


Co-expression Network