CI01000021_05632833_05637281 (COL9A3)


Basic Information

Item Value
gene id CI01000021_05632833_05637281
gene name COL9A3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5632833 ~ 5637566 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_05632833_05637281.mRNA
GGTGTTAAAGGAGCTCTAGGTGATCCAGGTCTGCCTGGTCCAACAGGAATCAGAGGCGGGTTTGGTGAGAGGGGAGTTGCTGGAAGTGATGGTTTACCAGGGGAGAACGGAGAGCCCGGTCCATATGGTCCCGTCGGCCAGAAAGGGGAGGCTGGTAAGCGTGGTGAACTGGGAGCCAAAGGAGTCGTCGGACCACAGGGAGAGATTGGAGGCAGAGGGCCACCTGGAAAACCAGGACCAATGGGATTCCAGGGAGAACAAGGTTTTCCAGGGGTCGCTGGAAAGACTGGTGTCCCTGGTAAACTGGCTAGTGAGCAGCACATCAGGGAACTGTGTGGCTCAATGATTGATGATCAGATGGCTCAGCTAGCTGCTAACCTGAGAAGACCCCTGGCTCCTGGTCCCGTGGGACGTCCAGGACCAGCTGGACCTCCAGGAAAGCAAGGAGAAGTTGGATCCATTGGTCACCCTGGAGCCCTTGGCCCGCCAGGCTATAGAGGACTGCCAGGAGATCTGGGTGATCCTGGTCCTCGAGGGGATGTCGGTGAGCCAGGTGATAAGGGCCCCATAGGTAAAGCAATCGAAGGGCCCATTGGAGACCAGGGTGACCAGGGTCTGCCAGGCGTGAATGGCATCGTCAAAGATGGCCGTGATGGAGCACCTGGAGATCCAGGAGAGCCAGGAGAAGCCGGAAGAGCCGGCAGACCAGGACACCAGGGATCACCTGGAATCTGTGACACTTCAGCTTGCCAAGGACCTGTGGTTCACGGGAAGTCCTCCAACCCCAAGAACCATTAACACCAGAAAGAACAGATTCCCTTTCAGGAATGCTTTGGGAGGAGAAACGGAACTGAAGAAGTGTCAGTGGACATCAAAGCAGCGTTTTCAGAGCTGAACAAACGTCGAGAGTGGAATGTTCAAGATTCCATCAGTGTAACTCAAGAACATCCACAGGCTTGAAGTGCAAACATGTGTAGATACAACAGAAGACCAAATACATCACACCGTGAAACCAGTTGATGTAAAAAAAAATATTTCAATCCTTGTAACGACTCTGTTAGAAGTGTCTTTGTCCAGCACCCA

Function

symbol description
col9a3 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization and skeletal system development. Predicted to be active in cytoplasm; extracellular matrix; and extracellular space. Is expressed in several structures, including head mesenchyme; hypochord; mesoderm; notochord; and pectoral fin. Human ortholog(s) of this gene implicated in multiple epiphyseal dysplasia 3 and osteochondrodysplasia. Orthologous to human COL9A3 (collagen type IX alpha 3 chain).

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K08131 COL9A; collagen type IX alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_05632833_05637281.mRNA True 1083 mRNA 0.54 8 5632833 5637566

Neighbor

gene id symbol gene type direction distance location
CI01000021_05607950_05611874 OGFR coding upstream 20273 5607950 ~ 5612560 (+)
CI01000021_05556724_05561020 SS18L1 coding upstream 71813 5556724 ~ 5561020 (+)
CI01000021_05542885_05545016 NA coding upstream 87237 5541357 ~ 5545596 (+)
CI01000021_05524969_05530651 LSM14B coding upstream 101801 5524816 ~ 5531032 (+)
CI01000021_05451019_05481032 NA coding upstream 151637 5451019 ~ 5481196 (+)
CI01000021_05700274_05719435 NA coding downstream 62708 5700274 ~ 5720762 (+)
CI01000021_05748401_05769219 NA coding downstream 110528 5748094 ~ 5769219 (+)
CI01000021_05786615_05790109 NA coding downstream 149049 5786615 ~ 5790938 (+)
CI01000021_05791905_05792161 NA coding downstream 154339 5791905 ~ 5793055 (+)
CI01000021_05808363_05825783 RAF1A coding downstream 170627 5808193 ~ 5825838 (+)
G119049 NA non-coding upstream 52392 5580170 ~ 5580441 (+)
G118984 NA non-coding upstream 65726 5562205 ~ 5567107 (+)
G118995 NA non-coding upstream 113904 5518621 ~ 5518929 (+)
G118974 NA non-coding upstream 114390 5517379 ~ 5518443 (+)
G119043 NA non-coding upstream 116023 5516508 ~ 5516810 (+)
G119072 NA non-coding downstream 42833 5680399 ~ 5680682 (+)
G119073 NA non-coding downstream 44037 5681603 ~ 5681820 (+)
G118964 NA non-coding downstream 145015 5782581 ~ 5785677 (+)
G119001 NA non-coding downstream 157290 5794856 ~ 5795722 (+)
G118958 NA non-coding downstream 159063 5796629 ~ 5801397 (+)
CI01000021_04886787_04893309 PLAGL2 other upstream 743325 4886337 ~ 4893474 (+)
G117493 NA other upstream 1597157 4033000 ~ 4035676 (+)
G117484 NA other upstream 1675081 3956146 ~ 3957752 (+)
G117202 NA other upstream 2304600 3269144 ~ 3328233 (+)
G117237 NA other upstream 2389469 3237854 ~ 3243364 (+)
G119701 NA other downstream 1162578 6800144 ~ 6860606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022057 col9a3 coding NC_007134.7 CM002907.2 495514 ~ 524780 (-)