RNA id: TU135734


Basic Information

Item Value
RNA id TU135734
length 846
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G119534
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 6438967 ~ 6441879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAATATGCTTTTCTAAATTCAGTCTATGACTAACTCATCCCCTTTATAGGACATCCACTGAAATATTTAAGCTAAAAAGGGCAAGCTTAATTAGCCAGCTTTATTAATTGTTAGTTGTTGAACTTTGTCCCTCGTATTAAGTGATGGTTGCATTGGTTAAACTAAGTACACTAGGATGTACCTGAGTGTCCTCTGATAGCAACAGCACATGATATACACACCTGTTGCACTCAGACACACTCAGGCTCATATAATGTTCCTGTTCAGCTCATCAGACAGCAGGACTGAATCACCTGTGCTGACTATCATATGACAGGATCCACACTAACACACTTACAGTAAACGCTACACCTACAGGAATGTGATGAAATGGAACTCTGGGAAGAATTAACAAATGTGTGCTTTCACTGGAGGGTCAAATATTTGCCACGTCTTTGTCTTCAACTCTGAAAACTTCCAGTGTAAAAGTTCAGTGTTGACGCACATTGTTGTCACACACCTCACAGAGCATGCATCACAGGTTAATATTTGCAATTAGTAGCAGAGCTTATCAGCAGATGATTATCTCTGAGGTTGACTCACCTGTGTTGAGCACCTTTTTAATGACAACTGCCACCTGACCCTTCAACATGGAGTTCAGCAGCTTGACGATCAGAATGAGGCAGGTACAGAGAGCCAGCAATGACAGAGCCAACAAAATCAACCCCACAGCCAGGTCAGGTAGATCAGCAAACACAAACATGTGAGTACCTTTTTTTTAAGTTGATGGTTTCCGTTTGGTTCTCTTGAGTCCAGACCTTGCCGCCCTCCTCCCAGCAGAGGGCATCAGGGGTGCAGTTTGCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135754 lncRNA upstream 37455 6401151 ~ 6401512 (+) True G119554
TU135624 lncRNA upstream 105381 6329280 ~ 6333586 (+) True G119426
TU135622 lncRNA upstream 115242 6318726 ~ 6323725 (+) True G119424
TU135629 lncRNA upstream 136393 6301508 ~ 6302574 (+) True G119431
TU135654 lncRNA upstream 226893 6211630 ~ 6212074 (+) True G119456
TU135768 lncRNA downstream 12162 6454041 ~ 6454265 (+) True G119567
TU135771 lncRNA downstream 13889 6455768 ~ 6456020 (+) True G119570
TU135774 lncRNA downstream 16527 6458406 ~ 6458691 (+) True G119573
TU135778 lncRNA downstream 34897 6476776 ~ 6476999 (+) True G119577
TU135779 lncRNA downstream 38197 6480076 ~ 6480409 (+) True G119578
CI01000021_06427686_06431101.mRNA mRNA upstream 7214 6427686 ~ 6431753 (+) True CI01000021_06427686_06431101
CI01000021_06423446_06426296.mRNA mRNA upstream 11359 6423446 ~ 6427608 (+) True CI01000021_06423446_06426296
CI01000021_06411964_06421511.mRNA mRNA upstream 17456 6411964 ~ 6421511 (+) True CI01000021_06411964_06421511
CI01000021_06408474_06411089.mRNA mRNA upstream 27878 6408474 ~ 6411089 (+) True CI01000021_06408474_06411089
CI01000021_06266751_06267607.mRNA mRNA upstream 170809 6264966 ~ 6268158 (+) True CI01000021_06266751_06267607
CI01000021_06746518_06768316.mRNA mRNA downstream 304639 6746518 ~ 6768340 (+) False CI01000021_06746518_06768316
CI01000021_06773262_06780081.mRNA mRNA downstream 331383 6773262 ~ 6780081 (+) True CI01000021_06773262_06780081
CI01000021_06786996_06789224.mRNA mRNA downstream 344982 6786861 ~ 6790800 (+) False CI01000021_06786996_06789224
CI01000021_06798250_06824148.mRNA mRNA downstream 356371 6798250 ~ 6824486 (+) True CI01000021_06798250_06824148
CI01000021_06906415_06933563.mRNA mRNA downstream 464536 6906415 ~ 6934141 (+) True CI01000021_06906415_06933563
TU134547 other upstream 1549459 4842733 ~ 4886292 (+) True G118432
TU133514 other upstream 2403291 4033000 ~ 4035676 (+) True G117493
TU133500 other upstream 2481215 3956146 ~ 3957752 (+) True G117484
TU133183 other upstream 3110734 3269144 ~ 3328233 (+) False G117202
TU135922 other downstream 358265 6800144 ~ 6860606 (+) True G119701

Expression Profile