CI01000026_10205804_10233324 (PAPD5)


Basic Information

Item Value
gene id CI01000026_10205804_10233324
gene name PAPD5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10205433 ~ 10234437 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_10205804_10233324.mRNA
ACCCAGTCCATTTGAGAACAACAGAACCCTTTTATGTAGTGTTTTATGGCCCACAGCAAAAGTAGATTATAAGATGTTTATGAGTTGTATAAGATCATAAACCTGTCTATGGAGAAAGAAACGTTGTCTAGAGGTGTTTGGTTATTTTAAACTTTTTGACATATATCAATAGTATGCTTAGTTAATGATGCCTGCATTGCAGTTCTGATTGAAAAAAATAAATTAATAAAATAAAAATATTTCTCAAGAATTAGGATACTGTATGATTATCTCAGTCACCATTCACTTTCATTTTATGGAAAATGATGGAATGAAAGTGAATAGTGAATAAAGGCTGTCTGTTCATAATGTTCTGCCCAATATCTTTTCTATTTCTTTGAAGAAAGAAAAGTACAGATTTGGAACAACAATTTATGGCAATTGTACATTTGTTTGTTTAATTTATTTTTTTGCACTTTAAGTGGTAAAAAAGAAACACTGGTCGAACCTGTCCCACAGTAATAATACTGTTTATATTCTATTCGCGGACTGTGTTCCCTAGTAATCTAATTTCTGTTAGTGCATTACAAAATAATCCAATTATAAGATAACAGTGAGACCCCATGCACTAGATATAGGGCTCATTGGATTAGCGCCACCTTTTACAGGGTACGTTTGAAACATGACACAAGCGAGAGGTTCATAATATTACTACAATGTATCAAACCTGCTGCTGTTACGTAACAGGAGCTGTAACGTGCGCTCTTGCGTAACAGAGTCAGCGCGTCCACGATGCTAGCTCGCTCGCGCCTGGTCGAGCATGCGCAGTCCGCGGTCTGTCCGCCATTGAGACACACGATCTCAGATAGAAACAGGTCAGAGGCAGTGACACAGACGACACTCACGTTTCTCCATTCCTCGTGCTCTGAAGTTTGACGGTTGCCGTTTTTTAAGCAGAACGTCTTTTTATAATCCGTTTACACTGGTGTATTCCTGTTCCGAGAGACGTTGATGGACCCGCACAGGATATTTTAGTTGCTGTCCAGGGCGAGTGTGTGTTCCCGTTAGTGGGTTAAGCGAACCGAGCCTGGCTCTGCTCTGGGGGCAAGTGTGCCTGCAGCAGCTTAGCGTTTGATGGATCCTAGAATCGCCTGGTTTCAGCCAGAACAGCGCGGACCCGCCAACAACCTGTGGATGCACATCTGGGAAACGACACAGACACTAGGAAACCTCTACTTTAACAACAACTGCAACACATCCAGCGCCAAACTGACGAGCGGCAGCAGCGGCGGGGACGGTGCGTCGAGCAACGCGGCCGACAGCAGCGGAAAGACCAAGGATCATCAGGGGATGTCTGGATCCAAACCTGAGAGCGAGGTCTCCGAACAGCAAGACTTTATCCCGCTGGAAACCAATAACAATAATAACAGCAGCAGTAGGGCGGGCAGGGGTGTCGGCGGAGGGGGGCAAGTGGGTGGCAGTGGGGTCGCAGGAGTGGGAACGGAGTTGCCAAGCAAAAGGAAGAGAGACAACAAGGCGAGCACCTTTGGCTTTAACAGGAGTCTGCTGCTGACAGATGGGGTGGAGGACATCTACACGGGCACACCGTGGAAGAGCAGAAACTATCCGGACGGCGTCGTGGGAAACCCAATGACCTGTTTGTGGAGTCATAAGTGTGCGTCTGCAGTGGGCGAGTTCATGTTGCAGTGGTTGCCGGCGCTGATGAATGCTGTCAGACTGCCTCTGCAGAGTGTCATGCCCAGGGCAGAACTTTATCATGCAGTTCTGTTTCACCATCACGATGACGTGGGAAAGCCTTTAATTCTCATACTCTTTAGAGTGAGAGCTTTAGTTTGCCGGCTCTGGCTGCATGAGGAGATAAAGGACTTTTATGACTACATTTCTCCTCGTCCAGAGGAGGAGCACATGAGGGAGGAGGTGGTGGCCAGGATCCAGAGAGTCATCAAAGACTTGTGGCCCAATGCTGAGGTTCAAGTGTTTGGCAGCTTCAGCACAGGCTTGTATTTACCTACAAGTGATATAGACTTGGTGGTTTTTGGTAATTGGGAGACTTTACCTCTTTGGACTCTGGAAGAGGCGCTACGCAAGAGACAAGTGGCAGATGAAAACTCGGTCAAAGTATTGGATAAAGCAACGGTCCCCATCATTAAACTGACAGACGCACACACAGAGGTAAAAGTGGACATCAGCTTTAATGTACAGAGTGGTGTAAAAGCTGCAAACCTCATTAAGGATTTCAAACAGCAATATCCTGTGTTACCATACCTGGTGCTGGTTTTGAAGCAGTTTTTACTGCAACGAGAGCTGAATGAGGTTTTCACGGGTGGAATCGGATCATACAGTCTGTTCCTCATGGCTGTCAGCTTCTTACAGCTGCACTATAGAGAGGACGTGTGTAGTTCTAACTCAAACCTGGGTGTACTGCTGATTGAGTTTTTTGAGCTGTACGGGCGGAATTTTAACTACCTGAAGACCGGGATCAGGATCAAAGATGGTGGCTCATACGTGGCCAAAGATGAAGTGCAGAAAGGCATGCTGGATGGGTACAGACCCTCTATGCTTTACATTGAAGATCCATTGCAGCCAGGAAATGATGTTGGGCGGAGTTCATATGGGGCGATGCAGGTGAAAGAGGCTTTTGATTACGCTTATGTTGTCTTAAGTCATGCTGTATCCCCAATTGCCAAGTACTACCCCAACAACAAGTCAGAGAGTATTCTAGGTAGAATAATCCGTGTCACACAGGAAGTAGCAGAGTACCGTGATTGGATCAGTACGCAGTGGGGTCAGAAGAGCAACAATGAGTCGGTCCTCAACTGTAATGCAAATGATGTCACACTGCTAGTTGAGCCTGAGGAACTTGATGAGTGTAATAATAACCTTTCAGAGGATGGTGTGGGGCTTCCTCCTGTGTCCCGGAGCAAAGTGTCATCCAACTCCTCCTCTCCTTCTCCCTCTTCTCCCTCATCACCATCGTCATCGTCATCGCAATCTTCAACTGCCTCTAGCTCAAGTGATGCGGACTCTGATGGAACGCCCTATAAGACAGCAAAAGCTTTGGGTGGGCGGGCCTCTTACAGTGAGAATACAGAAAGGAATCTGTCCAATCACAGATCACAAAATCATTCAGCAACAATGTCCACCCCTACTAATAAGGGCAATAAAAGCCGACAGCTTGCTAACAAAAGTGCTCAAGGGACACACAGCAACCCCAACAAGATGCAGCAAAACAGCAAGTCTCAAAAACTCATAAAGAAGAGGAAACCTCAGCGTGAGGTAGCGCACGAGGACCTGTGTAGATAGGGGGAGCTGTTACTGCAGACATACACCTGCTCTTAATTTCTCTGACCACTGAAGGGTGCTGGTGGTATCATTTTTCTCTCATGTCCCGCTGTTCAAGGGATGCGTGTGACTTTGTAGCTGGAAAAAGAAAAGAACAAAGGAAAAAAAAAAAGGAATAATTCAAGTGGGGCGTAGGCCATGGGATTGAAATCATGTGGGAAAGTTTAGGCCTGAACTCCACTGGCTTCTGTACAGCTTCTTCTCACTGCCCATAGAGGAGCTGCACTGCTCTGCTGGAGATGTGGAGGACCAGAGAATGTAGGAGAGAGAATTCAATTTGAGCAATACCTGAAGCCCTGGACTTTTGCCTCACTGAGGAAAACTGAAATAAA

Function

GO: NA

KEGG:

id description
K03514 PAPD5_7, TRF4; non-canonical poly(A) RNA polymerase PAPD5/7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_10205804_10233324.mRNA True 3674 mRNA 0.46 14 10205433 10234437

Neighbor

gene id symbol gene type direction distance location
CI01000026_10151857_10176733 ADCY7 coding downstream 28700 10150667 ~ 10176733 (-)
CI01000026_10133129_10135047 NA coding downstream 69788 10132915 ~ 10135645 (-)
CI01000026_10035392_10061141 NKD1 coding downstream 142963 10035069 ~ 10062470 (-)
CI01000026_10014914_10019772 NOD2 coding downstream 185234 10013575 ~ 10020199 (-)
CI01000026_09991433_10006016 CYLDA, CYLD coding downstream 199417 9991315 ~ 10006016 (-)
CI01000026_10234932_10250720 HEATR3 coding upstream 495 10234932 ~ 10250720 (-)
CI01000026_10347872_10351783 CEBPA coding upstream 113309 10347746 ~ 10351783 (-)
CI01000026_10421310_10440151 ABCC12 coding upstream 185722 10420159 ~ 10440927 (-)
CI01000026_10487830_10511296 SLC7A10A, SLC7A10 coding upstream 251378 10485815 ~ 10512739 (-)
CI01000026_10599580_10600367 NA coding upstream 364766 10599203 ~ 10600367 (-)
G133154 NA non-coding downstream 136638 10068396 ~ 10068795 (-)
G133144 NA non-coding downstream 174768 10030121 ~ 10030665 (-)
G133143 NA non-coding downstream 176673 10028552 ~ 10028760 (-)
G133070 NA non-coding downstream 230993 9973684 ~ 9974440 (-)
G133128 NA non-coding downstream 260081 9945007 ~ 9945352 (-)
G133669 NA non-coding upstream 16752 10251189 ~ 10251428 (-)
G133681 NA non-coding upstream 25708 10260145 ~ 10260357 (-)
G133683 NA non-coding upstream 26893 10261330 ~ 10261585 (-)
G133643 NA non-coding upstream 120384 10354821 ~ 10355463 (-)
G133646 NA non-coding upstream 121215 10355652 ~ 10357541 (-)
G132721 NA other downstream 654789 9550030 ~ 9550644 (-)
G132575 NA other downstream 817717 9387151 ~ 9387716 (-)
G131742 NA other downstream 1897726 8306776 ~ 8307707 (-)
G130256 NA other downstream 3888279 6275511 ~ 6317154 (-)
G129750 NA other downstream 5386151 4785885 ~ 4820249 (-)
CI01000026_10788054_10788652 CD59 other upstream 552902 10787339 ~ 10789709 (-)
G133790 NA other upstream 599578 10834015 ~ 10859589 (-)
G133802 NA other upstream 1067478 11301915 ~ 11307181 (-)
G136110 NA other upstream 4320480 14554917 ~ 14555436 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location