CI01000026_11226603_11231478 (SLC8B1)


Basic Information

Item Value
gene id CI01000026_11226603_11231478
gene name SLC8B1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11226603 ~ 11231478 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_11226603_11231478.mRNA
ATGCGTTCTATGCTTTTAGTTTTGTTTTGCACCGTTGCTCTGCAATGGGATCGTGTCAGCTGTCAGTCCAATACACAACACCTCGTTCCTGTTGGGAATGTCTGGAGTTCAGCCAGACCAGCAGACGTTACACTGAACCGCAATGGAGACGAGTGTGATATGGTGATGAACCTGTCTGCCAGTCAGAGATGTGAGTTTGTGAAGAATACCCCGGACTGTACTTCAGATGAAGGGTTCATCAAATACCCTTGGGTCACCTTCTGCCTGTTCCCACCTAATCTGTTGCCCCTAGTCATCACACTCTATGTAATCTGGCTGTTTGTTTTGTTCCTCATTCTTGGGCTGATTGCATCAGACTTTTTCTGCCCAAATCTTTCCGCCATTTCCTCCTCACTAAGACTGACTCATAATGTGGCCGGAGTAACATTCCTGGCACTTGGAAATGGGGCTCCAGATGTCTTCAGTGCCATGGCTGCTTTCTCTCACCCTCAAACTGCTGGTCTTGCCGTTGGAGCACTGTTTGGGGCGGGAATCTTTGTTACAACAGTGGTAGCTGGAAGCATTGCTCTGGTTAAACCCTTCACTGTGGCATCCCGTCCATTCCTTCGTGATGTCATTTTCTACATGGTGGCTGTGTTTTGGACCTTCATGATCCTATACAAAGGCCATATTTCCTTGGGAGAAGCCCTGGGTTATCTGGGGCTGTATGTTGTATATGTTTTGACTGTGATTGTGAGTGCATATGTTTACAATCGTCAGAAGCATCAGCTAAATGGATCGGCTCAGAGCTCAGGCAGAGAACAGGGT

Function

symbol description
slc8b1 Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in calcium export from the mitochondrion. Predicted to act upstream of or within calcium ion transport and transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC8B1 (solute carrier family 8 member B1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_11226603_11231478.mRNA True 807 mRNA 0.48 7 11226603 11231478

Neighbor

gene id symbol gene type direction distance location
CI01000026_11215228_11222347 SNX1B coding downstream 4256 11214887 ~ 11222347 (-)
CI01000026_11123998_11200321 AMBRA1A coding downstream 26282 11123998 ~ 11200321 (-)
CI01000026_11081510_11082996 CHRM4, CHRM4A coding downstream 143607 11080412 ~ 11082996 (-)
CI01000026_11074731_11075204 NA coding downstream 151396 11074586 ~ 11075207 (-)
CI01000026_10872568_10886442 NA coding downstream 340161 10872346 ~ 10886442 (-)
CI01000026_11280159_11287703 NA coding upstream 47693 11279171 ~ 11287703 (-)
CI01000026_11308038_11346628 OTOG coding upstream 76424 11307902 ~ 11346628 (-)
CI01000026_11353172_11356717 SLC22A18 coding upstream 120993 11352471 ~ 11356730 (-)
CI01000026_11363296_11365242 NA coding upstream 130613 11362091 ~ 11365242 (-)
CI01000026_11367029_11386064 NA coding upstream 135337 11366815 ~ 11386064 (-)
G133837 NA non-coding downstream 15026 11209845 ~ 11211577 (-)
G133944 NA non-coding downstream 156414 11069960 ~ 11070189 (-)
G133943 NA non-coding downstream 158301 11067826 ~ 11068302 (-)
G133924 NA non-coding downstream 248358 10977632 ~ 10978245 (-)
G133923 NA non-coding downstream 250937 10975381 ~ 10975666 (-)
G133981 NA non-coding upstream 5767 11237245 ~ 11240455 (-)
G133990 NA non-coding upstream 33606 11265084 ~ 11265312 (-)
G133802 NA non-coding upstream 70437 11301915 ~ 11307181 (-)
G133828 NA non-coding upstream 117834 11349312 ~ 11349588 (-)
G133994 NA non-coding upstream 126958 11358436 ~ 11358728 (-)
G133790 NA other downstream 388998 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 436449 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 877646 10347746 ~ 10351783 (-)
G132721 NA other downstream 1675959 9550030 ~ 9550644 (-)
G132575 NA other downstream 1838887 9387151 ~ 9387716 (-)
G136110 NA other upstream 3323439 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 5525251 16756729 ~ 16761341 (-)
G137667 NA other upstream 5574886 16806364 ~ 16808372 (-)
G137914 NA other upstream 5751773 16983251 ~ 16984352 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location