G133990


Basic Information

Item Value
gene id G133990
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11265084 ~ 11265312 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU152366
GATTCAGTATGTTTAACTCATCAGACACATACTCTATCGCAAGCACACACTTTTATCTTTTGAAAATATAAAGTAGTGTGATTACTGATAGTGATAGTCTATAGTGATAGACTACTGATATGATAGTCTGGCCATTTTCCTTTGTGACCACAAGGGGTCATGGGTTGCTGTTGTACTTCAGTCTCACTGAGCCATACACTCACTGGCCACTTTATTAGGTACATCTAAT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU152366 True 229 lncRNA 0.38 1 11265084 11265312

Neighbor

gene id symbol gene type direction distance location
CI01000026_11226603_11231478 SLC8B1 coding downstream 33606 11226603 ~ 11231478 (-)
CI01000026_11215228_11222347 SNX1B coding downstream 42737 11214887 ~ 11222347 (-)
CI01000026_11123998_11200321 AMBRA1A coding downstream 64763 11123998 ~ 11200321 (-)
CI01000026_11081510_11082996 CHRM4, CHRM4A coding downstream 182088 11080412 ~ 11082996 (-)
CI01000026_11074731_11075204 NA coding downstream 189877 11074586 ~ 11075207 (-)
CI01000026_11280159_11287703 NA coding upstream 13859 11279171 ~ 11287703 (-)
CI01000026_11308038_11346628 OTOG coding upstream 42590 11307902 ~ 11346628 (-)
CI01000026_11353172_11356717 SLC22A18 coding upstream 87159 11352471 ~ 11356730 (-)
CI01000026_11363296_11365242 NA coding upstream 96779 11362091 ~ 11365242 (-)
CI01000026_11367029_11386064 NA coding upstream 101503 11366815 ~ 11386064 (-)
G133981 NA non-coding downstream 24629 11237245 ~ 11240455 (-)
G133837 NA non-coding downstream 53507 11209845 ~ 11211577 (-)
G133944 NA non-coding downstream 194895 11069960 ~ 11070189 (-)
G133943 NA non-coding downstream 196782 11067826 ~ 11068302 (-)
G133924 NA non-coding downstream 286839 10977632 ~ 10978245 (-)
G133802 NA non-coding upstream 36603 11301915 ~ 11307181 (-)
G133828 NA non-coding upstream 84000 11349312 ~ 11349588 (-)
G133994 NA non-coding upstream 93124 11358436 ~ 11358728 (-)
G133999 NA non-coding upstream 155458 11420770 ~ 11421068 (-)
G134000 NA non-coding upstream 156045 11421357 ~ 11421556 (-)
G133790 NA other downstream 427479 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 474930 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 916127 10347746 ~ 10351783 (-)
G132721 NA other downstream 1714440 9550030 ~ 9550644 (-)
G132575 NA other downstream 1877368 9387151 ~ 9387716 (-)
G136110 NA other upstream 3289605 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 5491417 16756729 ~ 16761341 (-)
G137667 NA other upstream 5541052 16806364 ~ 16808372 (-)
G137914 NA other upstream 5717939 16983251 ~ 16984352 (-)

Expression


Co-expression Network