CI01000026_11280159_11287703


Basic Information

Item Value
gene id CI01000026_11280159_11287703
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11279171 ~ 11287703 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_11280159_11287703.mRNA
ATGTCCTGTTGCTCTGTTCTACTAATCTTACCCCACCGCACTCACACGGAGTTGGACCCTGCAAGACGCACACTTAATTGCACAGCAATACTTGCACAGATCAGCATCATCTCTCTCTTCTGGCCTCACTGTGTTGAAATGCTGATGGCTTTAAGTTATGGTAGTCAGCCTAATCTGCTTCCACAGCAGTACCCTCCCCCTTTACTGCCAAAACCAGGGCGAGACAATGCCCGTCTGCAGAAACTCCTGAAGAAAAGTGGCAAAAAGAAAGTCGGCTCTTCCTCTCAGACACCCATCCCATTCCGGTCAAACCTGTCACCAGTAAATGAGGCCAGCCCTGACCTAGAGCACAGTGACCACTCTACACCTCCAAGGACTCCAGAAACCCCTCTCTTTAGCAAGACCCTCGAGTCTCGATATTCCTCCAGCAACCCTTTCTGCAGTCACTCCCCCTCCCCATACCTATACCCTGCCAACAGCTCATACTACAGTTCCACACCTACACTGTCTGCGCAGTCGTACTCGTACCCTGCCCGATCGCTGGAGCACCAGATAGCACCTCTATACACATGCTCATCTATCCTTTTTGATGATGACTCAGAGCAGGCCACAGACACAGACCCAGATACATCCTTTGAGATAGCCTTTAGTCAAACGCTTCAGTCCAGTTCCTCAAGAGTAAGGATGACGCATGGCACATTCGGTGAACAACAGACCTATCAAGACTCAGTGCAAATACAAGCTCCCCCTTTGGCTCCAGTTCGACCTCCTGCTCCAAATTTGACATCATCCTGTGCACCGGAATCCCAGACACAACCATCAATCTCTCAAGTTCCAGTGAGCCAATCCAATGTGGAAGGATATAAAAATGTTGCACCTGCACTCATTACTCACACACCTCTCACAAATAGTCACGTCATGGAAACAGCTGGGTCACAATTCAAGACTTTCACAATGGAGAAAATAGCTGCTTTTCCACAAACAAGGATTTATACTCCAAAAACTTCATTTTATGAGATATCAAAGCCACCTATTCAAGACTCCTGGGCTTGTGGTTCAGCTTTTCAAGGAGAAGTACCATCTAATGCAAAACGTCCAGTGATAGATGTTAAACAAAATTCAGGGACAAGATATGAAGTTCAAAAACCTTCTAGTCAGATGAATACACATGTTTTTAAAGCTTCTGCAGATAATCAACACTTGTTTGCATTCAACTCTACATTATCCTCCACAATGGAGGCAGCAGTCTCTACAGAAAACCATCAGGGACCCATACCTCAAAATCACTGGCTCCAACCTCCCTCATCATTTAGTGAAAAAGCTCAGAGTGCAGCAGATGATCGTGATGATGGCCTTAAAAAAATTGCTGTGGATAAAATAATGAATTCCATTCCAAATGGTGTTGTGTTCGCCACAGGACTCAAACCATTAATTTCTCATGCCTATTCTGAGGAATGCTTGACACCAAAGATTTCTAAATGTGAAGTTTCCTTATCTAAGACCCTTGCTGAGGCTAGTAAGTCCAGCTCTAGAGCATGTGAGGTGCTGACATCTACAGTTCCACAGGAGTATCCAATGACTAAAACTGAAACTTCAGAAACCTGTATAATGACACCAGCCAAGTCTGTTCCAACAGATGTAAGTCAGGAAACATCCATGCCTGCACCCTCCCGAAACTACCAAACACCCAGTACTCCTGTATACTGGTCACCAAGACCACCAGCACGGTTTGTAGGCAACCAGAAGCCATTGCAAAATGAAACTAACATCTCGAAACGAAAGTCAACATACTACGGTTTGACACCTGCTGAATATATTGCTTATGGCGGAATCAAGGTGAATTCGCATGGTGATCCATCTGTCTCTAAGCCTGAAGTACCAGAAGATATAAAGAACATGACATATGAGAATTACATGTCCAAAACTCCAACCAAGACATCTCAAGAAATGCTTAGCATTATATCTGATGTCAATGCAGAGAAATCCTCTGCGGATTCAGAGCCTTTACAAACTTCAGTGGCAGTGCTGCCCTCGCAAATCGCAATGACAAACCAAGCAAAGGTACTAGTAACTGACAAAGCTGAAATAGAAACTATTAATAATCCCACTTTGGAAATAGCAGATCCAAGTTTAAAGGAGCATGAGACAATGCCTGGAGTACAACCAAGGCCTCTAGCTTTAAATCCTGAAGATGCAATGTACCATGGGCTTCAAAATACACCTTTAAGAATGGTTGTAAACCCTACTGCTGTAGCAGAGGCTCCTAGACAACTAAATTCAGGATCTACAGACATCTCCACCCCTCCTTTTGCAGCAGAGGGGAAAAAAATGCCTATTTACCCTTTTCCCCTGGTGCAATCAAATATTCCGAACTCAAATATAACCGGATTGTTAACAAAGAATTTCTTGTCGGTTCAAAATATCCCACTGCAAACAGTGCAGTCAGAGAATGCACACAGATCTATATATCCAACAGAAAGTTTTAATCCTGCATCAGTGAAAATGATGCAGTCACACGTTTCTGCAAATCAAGAGCAGAAAACAATCCCATGTTTTTCCAAATGTTCTTTAGAAACTTATTCTGCCATCTGTGATTCTTCTAGTGCCATCATTACAGGCAATCAACTCAATATCATGAACACCAACAATGAAGGTTTTACTGTAAATAAAATCACAACAAAATCAACCAATATCACAGACTCTAGAATGCCATCTGCAGACACCAGAAGTTACACTAAAGTCCCTCCAGATATTAAACCTGCAGCCCTCTCAAAGCCAGAGGAAACTGAATCTACAGCTCACTCAAGGTTAGGTTCATCTATCTTTACAGCCCCATCAAAGACAGAAATAACCAGACATGAAGCCTCATATATGTCTAATGCAGCCAATCCTGTAGTTTTGCCCAAATCAGATATATTTAACCGTCCAAGTCCCCCTAAAACTGATATATTTAAAACTGCAAGTCCCTCTAAACCAGAGGCATATCAACTTGCAAATACATTAAAATCAGATGCAGTTTACTCTAAACCAGGAGCAAATAAAACTGAAGTTTTATTAAACCCAAATTCAACACCTCCTTCCTTGAAATCCACTACTAAAATTAACCAAAACACAGAAGAAACCAAAGGTCAGCCGATGCAGAAACATGACAACAACATGGAATCTATTCTAAGCCCTTCAAATACATCATCCAAAATTCCCTCAGATGTACAGATATTTTCACCTGCACCTTACAGTGAGGCTCTAGTCACCCACTTGGCAATGGATAAATCTTCTAAACAAGACAATGGCAATGAAGACTTAATACCCCTCAGTGGTGTTATAAAAGACCCATCTATAGATTTGGAATCAGCCATGCAGGACTCCAATAAAACCAACACTGATTTCAAAGCTGCAGCTAAAGTTAAAGTTGAATCTAAATCAATAAATCCAACAGCACTACAAAGCAATTCAAAAGCAGCGATCAAACCATCAAATAACGTACACCAAGACACCAAATCGAATATGGATAGCATACAGTCCAAATCCTTAAAATCTGACACTCAAAAGGCTTTACCGTGTTCAAATGTCAAGACTTTTCAAAAAGCTCCAAGTGCAGAAAATAGTCTTGCTGCCATGCTTCTAAAGGCCGCCAAATCTCTACCACTCTCTTCATCTGAGGAAAACTGTGCTAAATCCCAGACAGAAGCCAAAGCATCTAATATGGATTTAAAGGCGCAACCTATAACTGCTCAGGATTGCATCAAAGATGCTGAAGTTCAAGTGTTAAAGTCTGATACCTCAAAACCTCAAAAGTGTTCAAAAGATTCATTAGCCACTGAAAGACAAAATGAGGCTGAAGACACTGAAGATGTCAAGTTTAGCAAAGAGACTTCCTCTGAACCTACACCAGATGATCAGAAGAGACTAAATGAACCCAAGGGTGCTCAGAAACCCAAAGGCCTGAAGGCCAAACTCAGTGGCTGGACAAGGCTGAAAAAGCACATGGTTGTTGAACCTGATGCCCCCAGTTTTCCAGAGCCTGATGAAGAGAAAAATGCTCAGAAAGCAGATATAAAAATAAGTGGTGAAGACAAGTCTGCAAGGGCCAAAGAAGAGTCAACGAGTGGGCAGGATATGGTGAAAAAGAAAGATGAGCCCAGGGTAACAAAAATGTGGGATGCTGTACTTTTTCATATGTTTGCCACAAAGGAGAACATTATGAAGCAGATACATGGCAACAAAACCGAGGAAGAGCGGAAAAAAATAGAGAAGGATGGCCAGTTAGTCCCATCCTTCGTCCACCGTCTGCCCATCCTTCTGTACAGCCCCCGCTTCAATGCCCGGAAGCTGAAGGAGGCAGCTGCAAAACCTCTCAACAAAATAGCTACAGCCTTTGAAAGAGGACTGCTAAATCGCAAACAGAAAGGTGAAGAGCCGAAAGACTTCAACAGAACAGCCAAAGGATTCGGTACATCTACAGGAAAAATGGCAGATGTTTGATTGAATTTCAAATGTACAGTGCAAAGTTGATTTCAACTACAAAATTACCCAATTATGTAGTATTGTAGTGCTGTAAATGTAACTTCCTTTTTCTTTATGAAATCAATGACGAGACAAACAAACTATGCACTGCGCTCCGCTCTGAGCAGTGCAGTAGGGGGCTGGTCAGCAGAAATTGAGGCCAAGTGCATTCCTTCATTGAGAAGGGCGACTGATGGGTGCAGCTGTTCGGGATGTGGTGAGTGAGGAAGTGAGCAAGGGCTGAAAATGTAATGGTGAGAATGATCAAACAAGGAAAGTGGCTCAGAGAGCAATGTGGATGGATCCTGGGTTTAAGTTTGCTCACATCAGCTGAGCTGGATGGTGTGAGCAGACGTGTTTTGAATAGAGAGTTTTAGAATGTGACGTCCTAAACGGTGTCAAGAGCCCTGCTCAGAATGAGTTATGGCCGTGTTGTTCATTTCAAAAAGGTCAAAGGGGAAAGTGGAAAGGTATAACTAGAACATGAAGGATGGAAATTGAAAAAAAAAAAAAAAATCTCAATTTGTTGGTCATAAAATATGATCTTAAAAACTAGTTTCAGATGTGTTATTTTTCACTTTTGTTTTTAGTTTAAAACCATTTGAGTTTTGAATGTTTTCTTACACATTTCTAGTGAAATGTTGCAAGTGATTTCATGCTTATGGATTCATTTGTTGTTCGGTGTCACAAATATTCATTAGACTGATGTAACAACAGGCATGTGACATTTACAGAATACTACCCAGGGCTGCAAGAAAAAATATATAAATAAATATAAAAAATAAGCTGGTAATTATGGCAGCCCTTGTACTTCAGGGATCTCTGTTGCAAAATCCAGCTGACTGCAATGTCATGCCCTTTACTCACTCCACATGCACATAATAGTTCAGCTTCAGCATGATTCTGAGACTTACTTCTGCATAACAGGAGAGAATGGATTAGATATATCCTAAACACTTCAAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_11280159_11287703.mRNA True 5470 mRNA 0.42 3 11279171 11287703

Neighbor

gene id symbol gene type direction distance location
CI01000026_11226603_11231478 SLC8B1 coding downstream 47693 11226603 ~ 11231478 (-)
CI01000026_11215228_11222347 SNX1B coding downstream 56824 11214887 ~ 11222347 (-)
CI01000026_11123998_11200321 AMBRA1A coding downstream 78850 11123998 ~ 11200321 (-)
CI01000026_11081510_11082996 CHRM4, CHRM4A coding downstream 196175 11080412 ~ 11082996 (-)
CI01000026_11074731_11075204 NA coding downstream 203964 11074586 ~ 11075207 (-)
CI01000026_11308038_11346628 OTOG coding upstream 20199 11307902 ~ 11346628 (-)
CI01000026_11353172_11356717 SLC22A18 coding upstream 64768 11352471 ~ 11356730 (-)
CI01000026_11363296_11365242 NA coding upstream 74388 11362091 ~ 11365242 (-)
CI01000026_11367029_11386064 NA coding upstream 79112 11366815 ~ 11386064 (-)
CI01000026_11481190_11482991 NA coding upstream 193378 11481081 ~ 11482991 (-)
G133990 NA non-coding downstream 13859 11265084 ~ 11265312 (-)
G133981 NA non-coding downstream 38716 11237245 ~ 11240455 (-)
G133837 NA non-coding downstream 67594 11209845 ~ 11211577 (-)
G133944 NA non-coding downstream 208982 11069960 ~ 11070189 (-)
G133943 NA non-coding downstream 210869 11067826 ~ 11068302 (-)
G133802 NA non-coding upstream 14212 11301915 ~ 11307181 (-)
G133828 NA non-coding upstream 61609 11349312 ~ 11349588 (-)
G133994 NA non-coding upstream 70733 11358436 ~ 11358728 (-)
G133999 NA non-coding upstream 133067 11420770 ~ 11421068 (-)
G134000 NA non-coding upstream 133654 11421357 ~ 11421556 (-)
G133790 NA other downstream 441566 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 489017 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 930214 10347746 ~ 10351783 (-)
G132721 NA other downstream 1728527 9550030 ~ 9550644 (-)
G132575 NA other downstream 1891455 9387151 ~ 9387716 (-)
G136110 NA other upstream 3267214 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 5469026 16756729 ~ 16761341 (-)
G137667 NA other upstream 5518661 16806364 ~ 16808372 (-)
G137914 NA other upstream 5695548 16983251 ~ 16984352 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033945 lsp1b coding NC_007118.7 CM002891.2 39410180 ~ 39440071 (+)