CI01000026_12036990_12067506 (UBE3C)


Basic Information

Item Value
gene id CI01000026_12036990_12067506
gene name UBE3C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12036648 ~ 12068858 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_12036990_12067506.mRNA
AGTTCAACGTCCCAGAGATTAGATCCCTTTCACCGTCCGCAACTGGTTTCCTTTCATTGCTGGGATTCATCCAGGAAGTAATTGTGACATTTTTCACGTTATTGACCTCGTTTTTAACCAATCGTTTGGTAGCAAGTGTTGTGTTGTCCAATCACATTTCACCGTGTTACTGAGAGGGCGGGCTGTTCTCTGTGTTGTGTTTGTTTAGTAGAGCAAGAGCAACGATTTCGGTTTTGTTTTCTTTGATTTCCAGTCGCTGAACTATAAGGTTCGGCTGATCATTCAGTAAAACCAGGTAAACAATTCGCATTTCATCATTAATACGACTCATCTGTAGAAAAAGCTGTATAACCTCACTGAAATCACTAGATGACTCTAGAAGCGAGAGCGACATATGACTGAAGTTTATGTCAAGCTGAACTAACATGTCAGAGCAGAGCACAGCATTGATGTTTCCAAATTACTGTCTTAATTCTCGTTAAGTGGTGACAGACCCCAAATAACATGCAGTTATACGTGTAAATTACTGGGAAATTGGGAATTGTCGAAGTGAAAGACAATTGAACTGCTGCTGAGTCATTAGCTAGCTAGTCAAAGAACCTTTAGCCAAGAGGCTAACAGAGAAGTTCAGTGGATCTGACTGAAGAAAATACCAGAAGTCTCTGTCTTTCACAGCGCAAATGCCGATTTATACTTGGACCTTAAAAGAACACGTTCGTAAATGATGATGAACTTCTGGTATAGTGATTCTTTACTGGTTCTGTATGTTAGCAAGCTAACTAGCCTGGCTTGAGTCATAACAAATGTATTTGTCTGCTTATGAAACAGCCCTTTTCTAGAACATGTTTCGCTCAGAAGAGGGTGCATGGCAAAGCAATTGTTGTACACACAGATATTTGTATGAATTAAACATATTTTTCCTGACTCGTTAATGTATAGATAAAGTTGAAATAATGACATTTCTTGTTGGTGATACACTCGTGTTATACAGCTCTGTTTAGTGTTGATCATTCCACCTGCTGAAGTGCCAGATTAGCTGCTGCTAGAATGACAATTTCCATTCACGCCCACTGTAACCTTCTGCACCTCTTCAGTTATCTATCACAAGGATAAAGTTGCTTTACATATCTTCTTCAAAACAGCCTGGTTTATTTCACAGTAGCAGCATCTTTACCAGTGTTTATTGTTACAAGCAAACATAAATTCTGTTATGAGAGAGTGTTTCCATTATGATTAGTTCATTGACTTGACTCCAGACTCATCATCATTTTTGTTTTCACCACAGACAGCACTTCGTTGCACTGCACACAAGATACTTGTATTGATTGCTGCTCAATGGGAAAAGTGTAACCATGTTCAGTTTTGAGGGAGATTTCAGGAGAACACCCAAGGTTTCCCTTGGGGGTGCTAGCAGAAAAGAGGAAAAAGCATCCCTTCTTCATCGAACACAAGAAGAAAGAAGGAAAAGAGAGGATGAGAGGAAAAGACTGAAAAATGCAATCATCATTCAGTCTTACATAAGGGGATACCAAGACCGGAAACAGCAATATGCCATCCAAAGGGGCTACTTTGACCACTGTGTGTGTCAGTGCCAGTCAGGCTCTGGCCCTCAACTTACAGACAGTGCCATACTCGGCCAACTTGTTCGCCAGCTTCTCTTTTTTTACAGACAAAGTGAAGACAGACACAGAATGATCTGGATGTGTCAGAGTTTGGTAAAGCATCATACTCAGTTTATCAAGCTGCTGACGGGGCCAGAAAGACAGAGCTGCCTGTTTCAGATCAAGAGGATATTGGGACACTGTTGCAGGTTATTGCAAGCATTTGAAGATAACAGTCTGAATGTGACGGTCCCGATGCGAATGCTGGAGGTGTTTTCATCTGAGAGAACCTACTTGCCCTTTCTACAGGATGAAAACTATGTCACTGCACTTATTGAGCAAATTTTGCACTATATGGTACAGAAAGGATACTACAGATCTCTGTATGTTTTAGTGAATCACAAGTTGCCATCGAGTCTAGAGTACAGTGACGCCCCTTCCATTCCGCTGGCACAAACGCTGCTGGAACACACACTCAAGCCTCTGCACTTTACATACAGTTCCTGCCCCCCAGATACCAGGCAGTTTGTTTTTTCAGCCTTCACTGAGGAGTTCATCTCAGCGCCTTTCACTAAACAAATCTATCATTTCATCGTGCCAGCTTTGGCAGACCCAAAACTAGCTTTCCCATTTCAGAACTTCCTTTGGTCACTCCAGGCCACCGTAGCCTCCTCTGCCCAGGCCAGAGCTCAGGCTCCTTGGCTCTTTTACTTTGTGCTATCAGTTGGAGAATCAGGACTGGGTTCACTTTCAGAGGAAGGGTTGCTGTTGTACTTAAATGCTCTACAGACTCTGTTGCCATTGTTGCCAGTGACGGAGTGCAACAGGAGAGCTGACATCAACAGTGATTCAGAAGATGAGGAAGAAATGACCGTACAGCATCCTGCTGCGCAGGATGGCAGTTGGATTTCTGTGCATTACATAACAGAGGAATGTGTGCAGAAGTTGGACACCAAGCAGCAGACTAATGCTCTGCTAACATTAGTGTGGAGAGACTCGGCAAGTGAAGACATCTTCACCATGATGGCCTCTATCTGTCACACTTTGATGGTGCAACACCGTATGATGGTGCCCAGAGTCAGGCTTTTGTACAGTTTAGCCTTCAATGCTCGCTTCCTTAGACACCTCTGGTATTTAATCACATCTATGAAGACTAAAATGATCACAGGCTCTATGGTTCCCTTGTTGCATGTGATGTCCCGTGGTTCTCCAATGTCTCCAGAGGACTCCAACAGGATCATCCCTCTCTTCTATCTCTTCAGTTCACTCTTCAGTCATTCACTCATCTCTGTGCATGACAGCGAGTTTTTTGGAAGCTCAGCAGATGGTATTAACCATGGTCAGAGCCAGTCGTCGATGATGCCCTTCTCTCTGGCAGAGTTGGTGACATTGTCTCGGTGTTTGCGGGACGCATGTCTGGGAATCATTAAGCTGGCCTATCCTGAGACTAAGACAGAGCACAAAGAGGAGTATGTAGCGGCGTTCCGTAGTGTCGGGGTGAAAACCAACAGCCAAGTACAGCAGCGCATTCAAGCGCAGCAGAAACGATGGGTCCAGCTCTTTAAGGTGATTACCAACCTTGTGAAAATGCTGAAAGCCCGAGATATCCGAAGACCATTCTGTCCATCGGGTCATTGGCTGTCTGATGAGGTCAACATCAGGGCAGACAAGGTGACTCAGCTCTATGTGCCCTCTGCAAGACATGTGTGGAGAACCAGGAGAATGGGACGTATTGGACCGCTTCAGTCTACGTTAGATGTTGGACTGGAGCCTCCACCATTGTCAGTATCGGAGGAGAGACATTTGGCTATCCTCACTGAACTACCGTTTGTTGTGCCCTTTGAGGAGAGAGTGAAGATTTTCCAGAAGTTGATCTACGCTGATAAGCGGGAAGTGCAAGGAGAGGGCCCTTTTTTGGATGGCGTTAACATCACTATTCGGCGGAACTACATCTATGAAGATGCATATGACAAATTATCCCCAGAGAATGAACCTGATCTCAAGAAGAGGATCAGAGTTCATCTGCTCAATGCTCATGGGCTAGATGAAGCTGGCATTGATGGAGGAGGAATATTTAGAGAGTTCTTGAATGAACTGTTGAAGTCGGGCTTTAATCCTAACCAAGGCTTCTTCAAGACAACTAATGAAGGTCTTCTCTATCCAAGCCCCACTGCAGAGATGCTTGTGGGAGAATCCTTCACCCGTCATTACTACTTCCTTGGCAGGATACTGGGAAAGTTGTCTCATTTGTCTTTCACTCACATACACTCTCAAACACAAATGGAGTCATTTGGATCAATGCTGAAGGTCAAAGGTCAGTTCAACAAGCAGTGCTTAACTGTCCCTATTGAAAGGGCAACAGAGAGGAAAGAGAAGGCGCTGTATGAAAACATGCTAGTGGAATTGCCTTTTGCCAGTTTCTTCCTGTCCAAGATTTTAGGCACCAGTGCAGAGGTGGACATCCACCATCTGGCCTCTCTAGACCCAGAGATGTACAGAAACCTACTTTTCCTCAAGAGCTATGAAGGCGACGTGGAAGACCTCGGCCTTAACTTCACTGTGGTCAACAATGATCTTGGGGAGGCACAGGTGGTTGAGCTCAAACCAGGGGGAAAGGACATCCCGGTAACCACAGCCAACAGGATAGCCTACATCCATTTAGTGGCCGATTACCGTCTGAACAAACAGATCCGAGCACACTGCCTGGCCTTTCGACAGGGCCTGGCCAACGTGGTCAACCTGGAGTGGCTGCGAATGTTTGATCAGCAGGAAATTCAGGTACTGATTTCTGGTGCACACGTGCCCATCTGTCTGGAAGACCTGAAGAAATTTACTAACTACTCAGGTGGTTATTCAGCAAATCATCCAGTGATCAAAATTTTCTGGGATGTGGTGGAGAGCTTCAGTGATGAGGAGAAACGCAAGCTGCTCAAGTTTGTTACAAGCTGCTCACGACCTCCGCTCTTAGGCTTCAAGGAGCTGTACCCAGCCTTTTGCATCCATAATGGAGGCGCTGACCTGGAGCGTCTCCCTACCGCTAGCACTTGCATGAACCTTCTCAAGCTGCCAGAGTTCTGTGACTCTCAGCAAATGAGGAACAAGTTACTCTATGCTATTGAATCCTCTGCTGGCTTTGAGCTCAGCTGAGGAATACGTCAACCCCTCGATGGCCTTGAAACCCAGACAAGAACCTGCGCCTTTTGTCATGGTGACCAGATAGAAAATGATCAGAATGAACAGACAGTGTGTCTGCTGTGGATGTCCAGTGATTTGCAGGTGTCGGGACATAAAAAACAAACAAATGCAGAAGAACAGTTTGAAGTTGTGGCACGGACAAATATATGCTCCGTTTTATTTTTACTTCAAAAAGAGTAAACTTGTATATAATGCATTTATAATTTCAATGCAGCAACAGGGAAGGCGTGCATTGATCAAAAGCATTAACAGTGAACAGGAACATCTGAATGTTGGAGATACTGAGGGAATAAA

Function

symbol description
ube3c Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Orthologous to human UBE3C (ubiquitin protein ligase E3C).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10589 UBE3C; ubiquitin-protein ligase E3 C

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_12036990_12067506.mRNA True 5090 mRNA 0.45 25 12036648 12068858

Neighbor

gene id symbol gene type direction distance location
CI01000026_12008640_12024213 DNAJB6B coding downstream 12435 12008555 ~ 12024213 (-)
CI01000026_11747661_11754397 NA coding downstream 281429 11746800 ~ 11755219 (-)
CI01000026_11745584_11746257 NA coding downstream 289940 11744948 ~ 11746708 (-)
CI01000026_11682328_11694593 SHRPRBCK1R, SHARPIN coding downstream 341648 11681667 ~ 11695000 (-)
CI01000026_11488673_11493122 GRPEL1 coding downstream 543526 11487951 ~ 11493122 (-)
CI01000026_12079761_12087407 NOM1 coding upstream 10549 12079407 ~ 12088424 (-)
CI01000026_12132260_12141706 RNF32 coding upstream 63083 12131941 ~ 12141706 (-)
CI01000026_12220025_12255410 RBM33 coding upstream 151167 12220025 ~ 12255410 (-)
CI01000026_12289057_12291515 EN2, ENG2A coding upstream 220078 12288936 ~ 12293418 (-)
CI01000026_12309243_12313256 INSIG1 coding upstream 240339 12309197 ~ 12313425 (-)
G134491 NA non-coding downstream 35421 12000949 ~ 12001227 (-)
G134490 NA non-coding downstream 40473 11995897 ~ 11996175 (-)
G134489 NA non-coding downstream 41281 11994619 ~ 11995367 (-)
G134487 NA non-coding downstream 43319 11993126 ~ 11993329 (-)
G134486 NA non-coding downstream 45765 11990540 ~ 11990883 (-)
G134498 NA non-coding upstream 7385 12076243 ~ 12076728 (-)
G134536 NA non-coding upstream 81667 12150525 ~ 12150785 (-)
G134577 NA non-coding upstream 249716 12318574 ~ 12318816 (-)
G134578 NA non-coding upstream 252373 12321231 ~ 12321504 (-)
G134579 NA non-coding upstream 252907 12321765 ~ 12322255 (-)
G133802 NA other downstream 729467 11301915 ~ 11307181 (-)
G133790 NA other downstream 1199043 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 1246494 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 1687691 10347746 ~ 10351783 (-)
G132721 NA other downstream 2486004 9550030 ~ 9550644 (-)
G136110 NA other upstream 2486059 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 4687871 16756729 ~ 16761341 (-)
G137667 NA other upstream 4737506 16806364 ~ 16808372 (-)
G137914 NA other upstream 4914393 16983251 ~ 16984352 (-)
G137967 NA other upstream 4999490 17068348 ~ 17069433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location