CI01000027_00060015_00076918 (BRD2B, BRD2A, BRD2)


Basic Information

Item Value
gene id CI01000027_00060015_00076918
gene name BRD2B, BRD2A, BRD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 60015 ~ 77028 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00060015_00076918.mRNA
ATTTGCTAGTAGGACGGCGCGGGGTAGCTCGAGCATAAGGAGTTGAATAACAATAAAACGGGGGCGAAAACGTAGGATTCCGCACCGCAAAACAGTCGCGATCCATCCGAATGGAGGCAGCCATCAACCCGTCTCTTGACAGCAGCTCTGTGGGAGTGAGCCTGTCTGTCATGAGTGGGATGGAGCAGAGTTCGGGCAAGCGTATTCGGAAACCCTCGCTGCTCTACGAGGGCTTCGAGAGTCCGTCTCTGCCCCACGCGCCTCCGCCCGGACCTCCTCCGCCCCAGCAGCCCCCAGTGAAAGACCCCAGCCGACAGGGACGCACCACCAATCAGCTGCAGTTCCTCCACAAGGTCTTGGTGAAAGCACTGTGGCGGCATCATTTCGCATGGCCTTTCCATGAACCCGTGGACGCGGTCCGACTCAACCTACCTGACTACCATAAGATCATTAAACAGCCGATGGACATGGGGTCAATCAAGAAGCGTCTGGAGAATAACTACTACCGCAGCGCCAGCGAATGTTTGCAGGACTTCAACACCATGTTCACTAACTGTTACATCTACAATAAGCCTACAGATGACATTGTGCTGATGGCACAGTCTCTGGAGAAGGTCTTCTTACAGAAGGTTGCCCAAATGCCCCAGGATGAGATCGAGTTTCTCCCTCCTACTCCAAGAGGTAGAGGAGCTAAAACCATCAAAGGCCGTAAAAGCAGAGGAGGAGGAAGTGTTATGACGGCTCACCAGGTGCCTGCCGTGTCTCAGTCGGCGTACTCTCCTTCCTCACCAGAGACGCCGGATTCACGGTTTTCCACCCCTCCACAGACCCTGCTGAGCAACACCGGCCCTCCTCCGCCGCTGATGACCCCTCCACCCACTCAACCCACTGCAAAGAAGAAGGGCGTGAAGCGTAAAGCAGACACCACCACTCCCACTACGCTCGGCTTCCCCGTGACCGCGGCTGCTCGGATGGGAGGCATGGGAAAAGGTCACGGATCGGCCGGAGAGATGCCCCACTCTTTGTCCTCCATGCCTGTTGACTGTTCTCCCAGTATGGGCGTGAACGAGCCCGCCCACCTCCAGCCCGTTTTGGGACGGCCGCTGTCTCGTCGACCAATCAAACCTCCGCGTAAGGACCTGCCCGAATCTGTGCGGCCTCATCAGCCCTCGCGGCGGGGGAAACTAAGCAAGCAGCTTCGCTACTGCAGCGGCGTCCTTAAAGAACTGCTGTCCAAAAAACACGCAGCGTACGCCTGGCCCTTCTACAAACCCGTGGACGCGTCAACACTGGGCCTGCACGACTACCACGACATCATCAAACACCCCATGGACCTCAGCACCATCAAGAGGAAGATGGATGAGCGCGAGTACAGAGATGCCCAGCAGTTCAGCGCTGATGTCAGACTCATGTTCTCCAACTGCTACAAGTACAACCCACCAGATCATGATGTGGTCTCCATGGCACGAAAACTGCAGGACGTGTTTGAGTTTCGCTTTGCAAAAATGCCTGACGAGGAGGAAGAGGACGGCCTTCCCATGAGTTACGACGACAAGCGGCAGCTCAGCCTGGATATCAACAAGCTGCCCGGGGAGAAACTGGGGCGCGTGGTGCACATCATCCAGTCGCGGGAGCCCTCGCTGCGCGACACCAACCCTGAGGAGATCGAAATCGATTTTGAAACGCTGAAGCCGTCCACACTGCGAGAGCTGGAACGTTATGTTATGACCTGTCTGCGCAAGAAGCCCCGCAAACCGTATGGTGAGCTGAGATTTAATGCTTTCGTGAAGAAGGGAGGAGGTGGAAAGAGCCGAGAGGAACTGGCTCTGGAGAAGAAGAGAGAACTGGAGAGGAGATTGCAGGATGTGAGCGGGCAGCTGAACTCTGCCAAGAAACCCCAGAAACCCAAAGGAACCAAGCATTTAATGCGTCAGCTGACATACTGTCATATAGAGATGATGGACGCTGGTTTTGAGCTGGAGTTTGACGGCGAGGAGCTCTGGCACGTCGATCCCGCGAACTACATCGCAAGACGGCGTTTGCCGGAGTTCGCCGCAGACTGGAGCCTCGACCGCAATCTGCCTTCTCAAGCGCACTACTCCATCGGGACCTGCTTCTATAATATTCCGTACGGTGTTAAAGGAGAAAATAATCCACCTGAATCCATCG

Function

symbol description
brd2a Acts upstream of or within central nervous system development; regulation of apoptotic process; and thrombocyte differentiation. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in B-cell lymphoma; B-lymphoblastic leukemia/lymphoma; juvenile myoclonic epilepsy; and photosensitivity disease. Orthologous to human BRD2 (bromodomain containing 2).
brd2b Acts upstream of or within thrombocyte differentiation. Is expressed in several structures, including head; immature eye; nervous system; ovary; and swim bladder. Human ortholog(s) of this gene implicated in B-cell lymphoma; B-lymphoblastic leukemia/lymphoma; juvenile myoclonic epilepsy; and photosensitivity disease. Orthologous to human BRD2 (bromodomain containing 2).
brd2 Enables chromatin binding activity; lysine-acetylated histone binding activity; and protein serine/threonine kinase activity. Involved in nucleosome assembly; protein phosphorylation; and regulation of transcription by RNA polymerase II. Located in nuclear speck. Implicated in B-cell lymphoma; B-lymphoblastic leukemia/lymphoma; juvenile myoclonic epilepsy; and photosensitivity disease. Biomarker of melanoma.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K08871 BRD2; bromodomain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00060015_00076918.mRNA True 2169 mRNA 0.56 11 60015 77028

Neighbor

gene id symbol gene type direction distance location
CI01000027_00058562_00058846 NA coding downstream 1169 58562 ~ 58846 (-)
CI01000027_00078634_00087807 TAP1 coding upstream 1464 78492 ~ 88719 (-)
CI01000027_00108990_00118237 NA coding upstream 31091 108119 ~ 118408 (-)
CI01000027_00131884_00132650 NA coding upstream 54367 131395 ~ 132650 (-)
CI01000027_00137910_00141799 NA coding upstream 60264 137292 ~ 144599 (-)
CI01000027_00178291_00179467 EXT1B, EXT1A, EXT1, EXTL1 coding upstream 101263 178289 ~ 179471 (-)
G139080 NA non-coding downstream 13463 39325 ~ 46552 (-)
G139111 NA non-coding upstream 4602 81630 ~ 81911 (-)
G139089 NA non-coding upstream 44470 121498 ~ 122505 (-)
G139138 NA non-coding upstream 68353 145381 ~ 145786 (-)
G139117 NA other upstream 157184 234212 ~ 237579 (-)
CI01000027_01241417_01245177 NA other upstream 1167607 1240478 ~ 1246267 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 1225006 1302034 ~ 1321178 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location