CI01000027_00078634_00087807 (TAP1)


Basic Information

Item Value
gene id CI01000027_00078634_00087807
gene name TAP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 78492 ~ 88719 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00078634_00087807.mRNA
AGAGAAGCGCATAGCACTAAACACTCATGAATATTAATTAGGGTACGCTGACGTAACATTATACGTGCTCACGTTCAGCGCTGCGCAAAGGAACTGAAGAAGAGAATGCAGGGGTTTCGAGACGCGTCTTAAAACGCGACACTCGTGACGCGAGAGCGCTCGACACTCAAATCATTGAGGTGAAACATCAAATACACCAATTTAGCGCTTAAACCGGCGACGTAAGTGTGTTACTTTTAGAGAAATGCAACCTTATGAATATTAATAAGACAAGCCCTCCTTGATTGGCCAGCACATTATCAACGTCTGACTGTGAGCCAATGAGGTAGGGTTATGTAGCCAAAGTCACGGTGCGTAATTAATATTCATTATTTTGACCCCAAATGGGGTTTTCCTTGCAGTTAGTTTCACACTTTCGGTTTCAGATTTGAACCTTATATGGAGGTTTCACTCACAGCATTCTCATCGCTCTTGTTTAGTTACTGATTTTAAACTATAACATATTAAATAAATGTGGCGGCGACACTAAAACACGTCGATTCTTGACATTTCAAACAGTTTCAGTAGTATCTGCTAACAAGGTACGTAGTGTTTCCTTTTTCTTTTCAATAACACACTTATTGTGTGAATGCACTGCTGGGAAATCTTCAAACATACACAATGTTTAAGTAATTCTCTACTTTTTGACTTTCAAAACGAGTTGCTTAGTTAGTAAACGCACTATTAAGTATGCAAATCTCATTGAGCTTAAATGAAAATTAATTTTAGAGTGAAAGTGAAACTGATTTAGCTGAAGTGTGCCATTCTTTTACTTTGTACATGGTAACATGATAAAGACATGTGATGATATCATGAACATGTTTATTGCACTTTTTTTTTTTTCATCCTAGTATTTGTTTGGCAGTGCAGGAGATGAAGGATAAGATGGCTGTTCCTCTGTTCGCCCTGTTGGCATTGTGCGTGGACGTGTTTGCAGTGATGTTCATCGGTGCCATCCAGCTGTCCCTCATCAGTAACGCCTTCATCATGCTGTGGGCTGGTGGACTGGTCCGAATCATACTCCTCCTCTTCGTCTCCTTCGCCTACTCCGGCAGCCCGGCGTGGATGAGAGGATTCGAGGGGGTGCAGACGGCTGTAGTTCACGGTCTCCTCTATCCGGTGTATATCTCCTTCCTCTGGGCTTGTGGCAAGTCTACTGTGGAGCTGGTGTGGGGCTGGCACACCTGGCAAGGGGGGTATTTGGTGTTGGCTATGTCTCTGTTGGTGTGGAAGCGCCATATACCCACTATCCTTCCGACAGCCAAAAAGCAGAAAACAGAGCAGAAGGGCAAGGCTTCGCTGCAAAGGCTGCTGGGATACATGAAGCCATTCAGTGGACGCTTTGCAGCCGTCTTCTTCTTTGTGGTTATATCTTCCTTAGGTGAAATGGCGATTCCTCATTACACTGGTAAAATGACAGACTGGATCATGAATGAAGATGAACCTGAGGCCTTTAACCATGCTATCACTGTCATGACCCTGATGACCATTATGAGCGCCGTGTGCGAGTTTGTGTGTGACCTCATCTACAACATCACCATGAGCCGAATACACACGTCCATCCAAGCGCTCGTCTTTCAGTCTGTGCTGAAACAGGACATTGCGTTCTTCGATAAATCTTCCACAGGCGACATCGTATCTCGCATCACCACCGACACCAACACCATGAGTGAGTCTCTGAGTGAGAAGTTGAGCCTGCTCATGTGGTACTTCATGCGCGTCATCTTCCTGTTCGGCTCCATGATGCTGCTCTCCCTCAGACTGTCCATCTTCACCGCACTCGGCCTCCCCATCATCTGGATCATCCCAGAATTTTCCGGCCGGTTCTACCAGAAACTTTCTGTGCAAGTGCAAGAATCTCTGGCGAAGGCCAATGATGTTGCAACGGAAACGTTCTCTTCCATGAAGACAGTCCGGAGCTTTGCTAACGAGGACGGAGAAACCGAGAGGTACAAGAAGTGCTTAGAGGGCACGTACGCCCTGAACAAAGTGGAAGCCGTTGCTTACGCTGCCTCAACCTGGACCAATAGTATGTCCAGTCTGGCTTTGAAAGTCAGTATACTATACTATGGAGGACGGCTTGTGACAGGAAGTGATGTCAGTAGCGGTGATCTGGTGTCCTTTGTGCTGTATGAGCTTCAGTTCACATCAGCTGTGGAGGTACTGATGTCATACTGGCCGCATGTAAAGAAGGCGGTCGGTGCTTCAGAGAAGATCTTTGAGTATGTAGACCGAAAGCCTGAAATTCCTCCAGATGGAACTCTCGCTCCTCAAACTCTAAACGGACATGTGCGCTTCGAAAATATCACCTTTGCTTATCCAAAGCGACCGGACACAAATGTGCTGAAGAACGTTTCTCTTGAGCTGAAGCCAGGTCAGATCACGGCTTTAGTGGGTCCATCAGGCTCTGGAAAAACCTCTATTGTGAGTTTGCTGGAGAGATTTTACCAGCCTCAGAATGGGCAGATTTTATTGGACGACGAGCCACTGCTGAGCTACAAGGACCAATATCTGCATGAGAAGATTAGTGTGGTGTCACAGGAGCCAGTTCTGTTCGCTCGGTCTGTGCGGGAAAACATCAAATATGGCAAAGAAGACGCCTCGGATGGAGAAATACAAGCTGCTGCCAAGCTAGCCAATGCAGATGACTTTATCTCTAATTTACCTAAAGGATATGACACGGATGCTGGAGAGAAGGGCGGTCAGGTTTCCGGAGGTCAGAAGCAGCGTATCGCCATCGCCAGAGCTCTGATTCAGAAACCTCAGATTCTAGTGCTCGATGACGCTACCAGCTCACTGGACACAGAGAGTGAACACAGGGTCTACAGCGCTCTGCGGAAGGACCTGAAGAGCTGCACGGTGCTGCTCATCACTCACAGACTGAGCGGCGTGGAGAACGCAGATCACATCATCTTCCTCCGAGAAGGGGAAGTAGTCGAGGAGGGCAACCATGACCAACTGCTGGCCAAACAGGGATACTATGCAGAGTTCGCCAAACAACAGAATACTGCAATCCATCGCAACAACGCAGAAGACGATACAAACACCGACCAATGATCATCCACATCAGCTATCATGTGATACCAGCACAAATCAGACGACACATTTTTGCATCTTTTCTCCATTAGTACATATTTCTCAGCTGTTCATTTGTGTAAATGCTGCTAGTGTTTTTAAATTAGGTGTAAATATCATTAAA

Function

symbol description
tap1 Predicted to enable ABC-type peptide transporter activity. Predicted to be involved in peptide transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in several diseases, including MHC class I deficiency; autoimmune disease (multiple); bronchial disease (multiple); diffuse scleroderma; and lung disease (multiple). Orthologous to human TAP1 (transporter 1, ATP binding cassette subfamily B member).

GO:

id name namespace
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05653 ABCB2, TAP1; ATP-binding cassette, subfamily B (MDR/TAP), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00078634_00087807.mRNA True 3238 mRNA 0.46 12 78492 88719

Neighbor

gene id symbol gene type direction distance location
CI01000027_00060015_00076918 BRD2B, BRD2A, BRD2 coding downstream 1464 60015 ~ 77028 (-)
CI01000027_00058562_00058846 NA coding downstream 19646 58562 ~ 58846 (-)
CI01000027_00108990_00118237 NA coding upstream 19400 108119 ~ 118408 (-)
CI01000027_00131884_00132650 NA coding upstream 42676 131395 ~ 132650 (-)
CI01000027_00137910_00141799 NA coding upstream 48573 137292 ~ 144599 (-)
CI01000027_00178291_00179467 EXT1B, EXT1A, EXT1, EXTL1 coding upstream 89572 178289 ~ 179471 (-)
CI01000027_00332200_00343377 NA coding upstream 243263 331982 ~ 344039 (-)
G139080 NA non-coding downstream 31940 39325 ~ 46552 (-)
G139089 NA non-coding upstream 32779 121498 ~ 122505 (-)
G139138 NA non-coding upstream 56662 145381 ~ 145786 (-)
G139117 NA other upstream 145493 234212 ~ 237579 (-)
CI01000027_01241417_01245177 NA other upstream 1155916 1240478 ~ 1246267 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 1213315 1302034 ~ 1321178 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location