CI01000027_01059994_01067301 (RAB11A, RAB11AL, RAB25, RB11A)


Basic Information

Item Value
gene id CI01000027_01059994_01067301
gene name RAB11A, RAB11AL, RAB25, RB11A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1058928 ~ 1067361 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01059994_01067301.mRNA
ACAACGTCTTAATATTTGAAAACACGGAGTTCTTATTAAGCCGGTAAGAAGATTAAAGTCATGACGGGTAGAGAGGACGAGTATGACTATCTCTTTAAAGTGGTTCTGATTGGAGACTCTGGTGTGGGCAAGAGTAACCTGCTCTCTCGCTTCACCCGAAATGAGTTCAACCTGGAGAGCAAGAGCACCATCGGGGTGGAGTTTGCCACACGCAGTATCCATGTGGAGGGCAAGACCGTCAAGGCCCAGATCTGGGATACGGCTGGACAGGAGAGATACAGGGCCATCACATCAGCGTATTACAGAGGTGCCGTAGGAGCCCTGCTGGTGTATGATATCGCCAAGCATCTGACCTATGAGAACGCTGAGCGCTGGCTGAAGGAACTGCAGGATCATGCTGACAGCAATATTGTCATCATGTTAGTAGGGAACAAAAGCGACCTGCGCCATCTGAGGGCTGTTCCTATGGATGAAGCCAAAGCGTTTGCAGAGAAGCATGGACTTTCTTTCCTGGAGACCTCAGCGCTGGACTCTTCTAATGTTGAACTTGCATTTCAGACCATTCTTACAGAAATCTACCGTATCGTGTCCCAGAGGCAGATGTCAGGGCGTGGCGATGACAGCTTCTCCCCCAGCTCCAAAGTGGTTCCCATTACTGTACAGCCCACACAGAATTCTGGCAAGCAGGGTGCCTGCTGTCAGAATAACTGATCTGCCACAGCGCCACCATGGGATCCGGGGAAAATCGACAACTTTGCTGGGCTGGGCTGCGAGGTTGACCGTGACCGTCCGACTGCGTTGTATTCCCTTCGCGTGGTGTGGTTAACATATGTAACGGACTTACTTAGTTATGCCCAGAATCAGTGAGTAATAATGTTCAAAATTGGACAATAAGGGATGTTGAAATTGAATGGATCAAACATTTTCTCAGAACTAAGAGGCCACGCTTCTTGTTTCAGACTAATTAGAAATGAGCAGTTAGCTGGGGCGCTCAGACATGGCTGCTTTTTTCATACTTTTTGTCACAGACAGTCTGCTTACAAACAATGGGCTGGAAGAACGAGAAAAAGTGCAGAATGTGTAATGCTACCTTTAAATAACTCTTGAATGGTTTCTGATCACAATGGGGATCCACTAGTGAAATTAATATTTTTTTCTTTTAGTGTGCCACCGTCTTACAGTCTTCACTTTAGTCTGACAACTTTTCCATGCATCTGTATTCCAGAGAAAATCACACTATGGTCATCATAGCGTTCGGTCAGTTCTTACACAGATGCCACTGTAACGGCTCTTTTGTATTTATTGAATGCAAATATGATCTTATACTGTGGTATTTTTGCTTTCTTTTGTCATGCTTCTGTGAACGTTTTTTTTTTTTTTTTTTTTTCTATCACTAGATTATTGATCGGAATTTCTCAAGGGTTTCTTCTTCCAGTCATGGCACTCATTTGTACGAGCGCTGGGAGTGTTTTCTGTGGATCAGAGTAATGTTGATAGGTTAAGCTAATAGACAGATGTATGTGCTGTAGTGTTTGAGTATAAGCGAGTAGGATATTCAGATTCAGGGTTGGGAATTGTTATCTGGTTCTCAAAAAACAAAACTTACCAAATTATTTTCATGCAGCCTGTTATCAATTTTTGAATGTATTCATTCTTCTGCATCGGCATGATAAAATATTCAGAAAATATACAATATATGCATTAAACATGTCTGATGGCATAGCGATCATTATGCATCTTATTTCATGTCAATTATGAATTTAAAATCAGCAATAAA

Function

symbol description
rab11a Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within Kupffer's vesicle development; angiogenesis; and melanosome transport. Located in recycling endosome. Is expressed in several structures, including blastodisc; brain; caudal vein plexus; digestive system; and pronephric duct. Orthologous to human RAB11A (RAB11A, member RAS oncogene family).
rab11al Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in exocytosis. Predicted to be active in recycling endosome. Is expressed in several structures, including EVL; hatching gland; integument; periderm; and polster.
rab25 Enables myosin V binding activity. Involved in several processes, including positive regulation of cell population proliferation; positive regulation of epithelial cell migration; and pseudopodium organization. Located in cytoplasmic vesicle and pseudopodium.

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process

KEGG:

id description
K07904 RAB11A; Ras-related protein Rab-11A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01059994_01067301.mRNA True 1777 mRNA 0.43 5 1058928 1067361

Neighbor

gene id symbol gene type direction distance location
CI01000027_00823197_00901936 THSD7AA, THSD7A coding downstream 156992 822225 ~ 901936 (-)
CI01000027_00808322_00809068 NA coding downstream 249860 808068 ~ 809068 (-)
CI01000027_00798826_00806532 ICA1 coding downstream 252396 798686 ~ 806532 (-)
CI01000027_00742700_00758723 COL28A1B coding downstream 300205 742631 ~ 758723 (-)
CI01000027_00701871_00719591 COL28A1B coding downstream 339337 701766 ~ 719591 (-)
CI01000027_01072444_01076227 RAB25B, RAB25, RAA2A, RAB25A coding upstream 4654 1072015 ~ 1076227 (-)
CI01000027_01078554_01079951 MAPIP, ROBLD3-PS1, LAMTOR2.L, LAMTOR2.S, LAMTOR2 coding upstream 11075 1078436 ~ 1079951 (-)
CI01000027_01082314_01087880 UBQL4, XDRP1, UBQLN1, UBQLN4 coding upstream 14588 1081949 ~ 1088604 (-)
CI01000027_01111716_01114630 NA coding upstream 44317 1111678 ~ 1115560 (-)
CI01000027_01198110_01199285 RPZ4 coding upstream 130129 1197490 ~ 1200933 (-)
G139373 NA non-coding downstream 14549 1044041 ~ 1044379 (-)
G139364 NA non-coding downstream 29053 1028269 ~ 1029875 (-)
G139360 NA non-coding downstream 51506 1007194 ~ 1007422 (-)
G139359 NA non-coding downstream 53517 1005169 ~ 1005411 (-)
G139354 NA non-coding downstream 74184 984490 ~ 984744 (-)
G139382 NA non-coding upstream 41189 1108550 ~ 1108876 (-)
G139405 NA non-coding upstream 92685 1160046 ~ 1160265 (-)
G139406 NA non-coding upstream 93031 1160392 ~ 1160644 (-)
G139409 NA non-coding upstream 142885 1210246 ~ 1210464 (-)
G139117 NA other downstream 821349 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 925126 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 940625 108119 ~ 118408 (-)
CI01000027_01241417_01245177 NA other upstream 177274 1240478 ~ 1246267 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 234673 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 1054769 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 1159264 2225781 ~ 2227499 (-)
G140118 NA other upstream 2434173 3509352 ~ 3584679 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010245 rab11al coding NC_007127.7 CM002900.2 46725087 ~ 46741779 (+)
bowfin (Amia calva) AMCG00012357 LOC107726679,LOC107671462,LOC107592127 coding CM030138.1 CM030138.1 16829034 ~ 16841186 (-)