CI01000027_01198110_01199285 (RPZ4)


Basic Information

Item Value
gene id CI01000027_01198110_01199285
gene name RPZ4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1197490 ~ 1200933 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01198110_01199285.mRNA
ACAGCTTAGTCTTTCAAATGAGAAAATAGTGTGTTTTGTCTGTCTGTGCAAATTAAGTGCAAAATAAAATGTGGTGTTTAACAGAAACCATTAAATAGCAAATGCAAATTTAATCTTTACATTTATTTTCAAAAATGATGTGAGCAAATGAATACAAATGAATGACATTTATGTGATTCATGTTGTGTGTAATGGCTGCTGTCATTGTGACAAAACTGAGAATATGTAGACCTGCACAATTCTGTTGTATTGCTGAGAATGCACAAATGTGATATGAAATAATTTCTTTTGAAAAGCGATTGTTTTATTCAAAATTACACTTCCTTTCAAAAGTTTGGGAATGATTTTTTTTATGTGTATGGAAGAGTCTCTTATGCTCACCAAGGCTGCATTTATTTAATCAAAAACACACTAAAAACATTAAAGGGTTAGTTCACCCATTAATTACTCACCTTCATGTCTTTCAAAACCTGTAAGACTTTAGTTCATCTTTGGAACATAAATGAAGATCTTTTTGATGAAATCTGAGAGCTTTCTGTCCCTATATTGACAGCTACGCAACTACCACTTTCAAGCCCCAGAAAGGTAGTAAATTACATAAAATAATCCATGTCACTCCAGTGGTTTACCCTCCATTTTATGAAGCGAAGTGAGTGCTTTGTTTGTGCAAAAAAATAATTTACCACTTTATTTCCAAAATATTAATCTCCAATGCGCATTCGCGAGAACACCACAACACAATGCATGCATGTTGTGTTACATGAATGTGTGTTGGAGATTAATATTTTGTAAATAAAGTTGTAGTAAATTATGTTTTTTCCGCTAACAAAGTGCTCGCATCGCTTCTTAAAATTGAGGTTAAACCACTGGAGTCACATGGATTACTTTAATGATGTCTTTATTACCTTTCTGGGCCTTGAAAATGGTAGTTGTGTAGGCTGTCAATGGAAGGACAGAACGCTCTCAGATTTCATTAATAGATCTTCATTTGTGTTTCGAAGATAAACAAAAGTCTTACGGGTTAGAAACAACACAAGGGTGAATAAATGATGACAGAATTTTCATTTTTGTGTGAAATAACCCTTTAATATTGTAATATTATTACAATTTAAAATAACTGTTTTCTATTTGAATAAATTTTAAAATGTAAATTATTCCTGTGATTAAAAAAAAATCTTACTGACCCCAAACTTTTGAATGGCAGTGTACATTTAGAACACAAAATCATAACTATACTTTATACACCGTTGTCATATTCAAACTTTAAATACTACAGTGAAGTGTTTAAATGGGTTTGAAATTTAAGATAAAAAAGATTTTATTTCTGTAAAAATCCATCATGCTTTATTATGTAAAGTTGCATTTTTTTTGCATATTGTCCTCCACTTCACAATTGTTTTAAAACTTTTTTTGATGGTTCACTGCATGGGTAACATTTGGTAATAAGCCTCCTTTAAGTATAGGTGTGGTATGTGCAGGTATTTTTGTAGTAAATCACCCACAATATGGACATGAAGCATCAAATTTATTAGATTGCACAAGCAAATAAGTTAGCTTAAACTATAACATACTAAAATTAAATGGTCTTATTTCTAATTATGAACTAATCTAATTTTACACAGAGACATTTTGCAATTGAAACTGAAAGATGGCCGAGCAGCTGCAGAAACTTGTTGCACAGAAGAAGGATGTTGTCGAGACCGCGATGGAAATGTTTGAGCAGGGTGCAGAAGTGTTGGCCAGCATCGCTGGAGATCTGTTCCCTGTGTTCTCCATCGCAGCTCCGATTGTCAAGCTGGCGCTGGATAACGTGGAAAGCAAAGAGGCTGAATACATGAAGGAGCAGTTCCAGAAGGTGCGAGAGCGCCTGGAAGTCGTTTCTGAAGAGGTCCAGCAGATAAACCAGGAGATCAAGAAGAGCGGGGTAGATGCCACCTACTTCTCAGTGGAGGAGAATCTAACCAACCAATTCCGCAAATTCATGGACGTCCTGAATGCGAAACCCAAATTCAGAGAGGTCCGTAAGAAAACATTCCTGGAACACTTCAACAGGACAGGGGGTGACAAAAACTTGCACACTCTGTATAATGCCGTAACAGGAGATAACTTCTCAGGAGAGTCTGTTCTGGAAATCACTCTGAATTACGAGCAAAAGAGCCGCAGAGCGGTGGAGGAGTTCTGCGCTATGCTTAAGAAATTGTTCTGCATCGGTTTGATCGCCTTGCTGGGACAGGCGGCATTGAAAGGCGATGACGATGAAGAGAAGTTGCTTCAAGATTGGAGCGAGAAAATGCAAGTGGTCCAGTCTAAAATGAACGTCGTGATTGAAGACTGCATCAACAGCTTTCCGGCGCAGGCAGAGCTGGACTCCAAACGCATAGTGAGAGACCAAAGCGACAAAAGCAACCAGCAACTGGCCGACATGCTGGTGGAGCACCTGAAAAAGAAATACGACTGGGTGTGCTGGTCAGTCCGCATCTTTAACTCGCCCACAGGGCTGTTCACCAACAAGAAAGACTTCCAGGGTTTGACGGGAAAGAGTCGCTTTCTGGTGCCTTCGTCGGATGACAAGCTAAATGTTGTGGTCTCCTACAGCGCCTCACCTGAACCCGTCGATAAAGCCAGGATACAGAGCCTGGTCATGGAGCAGAAGAAGATCACGATGACGCCGATGGCTGAACTGCTTTTTGACACAATCCCTCTCTGTGTGGTCCACACAGTCAAGACCTCATGCAAAGATTTGGGCTTCTCCAGCAGCTTCTCTGATGAGCTGCACTACTTTGAAGAGTTCAAGAACTTTTATGTCTTTCTTCATTCGGCTTAAACAAGGCAGGGAATTAGAAATACTATTATTGACAGCTAAACAGATGTTGTATGATATGTTCACACCATGATATTCCATTAAACTACCATAATTAGAGTGTTTAACCTCTCTAAGGTTATGACTTTAATGACCAAAATGTACTCTATGCTTTTTTTTCATCTTTTTTTCCTAGTATTGCTTTTATCTATGCTTGTTTTAAAGTTACAAATGAACACTTTTAATATATCGAATTTGTTTTAAATACCAAATTTGTGTTTTTACTCCCTTATTAGTGTATACTGGGTGATGGTAGCCTATCATTTAGGCTGGTGACACAAGTAGAGTAATCTCAGATGGCATGCCAACAGACCGTCCACATTCCCTGATTGTATGCAAAATGTTTGCACAAATGTGTTTAAAAGTTATGAACACTTTGAGGATGAACTAATTACTAGTTTTGACAAAGTTCACCTCGTTTATAGCTTTACATCTTTGACAAAAACACTTCTAGGTATCTAGATATTATCTAGATTTTTTGTTTTCTTTTTAAAATATTTTATTGTAAGTTTTTAACAATGTACAAAGCAAGGAGCACAAACAAAGCAATAACACTGGAAATAATGAATGAATAGCAAAATAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01198110_01199285.mRNA True 3444 mRNA 0.37 1 1197490 1200933

Neighbor

gene id symbol gene type direction distance location
CI01000027_01111716_01114630 NA coding downstream 81930 1111678 ~ 1115560 (-)
CI01000027_01082314_01087880 UBQL4, XDRP1, UBQLN1, UBQLN4 coding downstream 108886 1081949 ~ 1088604 (-)
CI01000027_01078554_01079951 MAPIP, ROBLD3-PS1, LAMTOR2.L, LAMTOR2.S, LAMTOR2 coding downstream 117539 1078436 ~ 1079951 (-)
CI01000027_01072444_01076227 RAB25B, RAB25, RAA2A, RAB25A coding downstream 121263 1072015 ~ 1076227 (-)
CI01000027_01059994_01067301 RAB11A, RAB11AL, RAB25, RB11A coding downstream 130129 1058928 ~ 1067361 (-)
CI01000027_01204940_01206121 RPZ5 coding upstream 3536 1204469 ~ 1206319 (-)
CI01000027_01232167_01232844 NA coding upstream 30624 1231557 ~ 1234381 (-)
CI01000027_01241417_01245177 NA coding upstream 40404 1240478 ~ 1246267 (-)
CI01000027_01249889_01250572 RPZ coding upstream 48529 1249462 ~ 1250579 (-)
CI01000027_01254220_01254900 NA coding upstream 53196 1254129 ~ 1254951 (-)
G139406 NA non-coding downstream 36846 1160392 ~ 1160644 (-)
G139405 NA non-coding downstream 37225 1160046 ~ 1160265 (-)
G139382 NA non-coding downstream 88614 1108550 ~ 1108876 (-)
G139373 NA non-coding downstream 153111 1044041 ~ 1044379 (-)
G139409 NA non-coding upstream 9313 1210246 ~ 1210464 (-)
G139410 NA non-coding upstream 10452 1211385 ~ 1211600 (-)
G139412 NA non-coding upstream 15937 1216870 ~ 1217069 (-)
G139424 NA non-coding upstream 40870 1241803 ~ 1243713 (-)
G139117 NA other downstream 959911 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 1063688 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 1079187 108119 ~ 118408 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 101101 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 921197 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 1025692 2225781 ~ 2227499 (-)
G140118 NA other upstream 2300601 3509352 ~ 3584679 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010239 rpz4 coding NC_007127.7 CM002900.2 46497149 ~ 46503818 (+)