CI01000027_04860802_04872130


Basic Information

Item Value
gene id CI01000027_04860802_04872130
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4860802 ~ 4872566 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04860802_04872130.mRNA
GGAAAACCTCAGTTTCATTACTACACAACCACTGGTCATCCACGGGGCCCTCGTGTCCCAAGCCCCGGCTCTGTATCTGGCAGCTATCAGCACCCTTCTCTTTACTCCTCTTACCCGGGTGCTCCTGGCGTACCTCCACATGGTCGTCCTTTTCCCCCTAGTCCCTCTGAACCACCCCTGTGGGCATCCCCCCAGCACAGCAGTGATCAGATCTCTGACTCAAATGGTGTAAGCTTCCGACAACACCAGGTGCAGTTCCTCAGGGGGCAGAGTGCACACGCTCCACAGTTCAGAGGACCCCAACAGCGAGGGTCCCAAACCTCCAGCCAAGGGGAAGAGGTCTCAACTGGGCCTCTACATTACCAGACAGGTTATCGCGACTTCAAAACAAGCGGTAACAGTTTTGGAAGAAGAGACTGCTACAGCAGAGGCCGAGGAAACTGGCAAAGGGAGCATAACTTTGGACCTAAGAAAAAGTCAGGGTGGAATCACCCTCAACAGAAGGGACAGTATTATCCGAATCAACACACTAAGCATTACTGGAATACACAGGTTGATGATGTGTCCTTTGGCCTTCATAGTCTGAGTTTAGGTGACCGGATAACAAGGGTAGACAACTCTGACGCTTTGTCTTGCAGTAGCAGTGCCAGCAAGGTTTCCAGTTCTCCCGACTCGGTCAGAGAGTCTCTTTATTTGACCCCTGAGATCCAGCAACAAGTCTTTGCTTTTTTGAAGTCACTCGGGCCAGACGAGACCGTTCACGCAAGGGCCTTGGGCAAAAAGCTGAATCTCCCCAAGACGATTGTTAATAAGGCTTTATATGCCCTCTTAAGGACAAACCAAGCGGTGAAGCAAGGTGAGATTCCTCCTCTGTGGAGACTCTGTAAGGTAGAGGACAGTGAGCCCATCAAAGGGAGAGACCAATCGCTGTCTTCAAAGGATTTGGAGAAAGAGCCAGGTCAGAGTTCATCCATAAACCAAGAGTCTAGAGAGCATCCCACCAGCACCGGCGCTCCCTCTGCATCCCAGATCCTCTTTGAGGCTGACGGCAATATCAGTGACCAATCAGAGGATTCTGAAGGTGACGATACCTCTGACACGTTGTTTCCTGTCCAGGATCAACAGATTCTTTTACCTGCAGTGCAGTTGGAAACCTTGTCAACAATGGCCGAGTCTAAAGATAGCAAAGAGAAGATCCTACAGTACCTCTATGAAGTGGGTACGGGTAATGCGCTTGTGATCGCCAAGAACCTCGGCCTGCGCAGTGCCAAGCAGGTTAATCCCACACTCTATGCCATGGAGAAACAAGGTGATGTAAGGCGCAACACCGAAGTTACTCCACCTACCTGGGCACTTAGTGCGCACCGGCAGGAAAAGATGGACCGCCAACGTAAAGTTGCTGCGACTGCAAGACAGGATGTGAACAATGCTGAGATGTTGAACTTGGCAGCTGAAGGGATTGCAGACGAAACTTCGGTCAAGTTGGAAGCAGACGATGAATTTGATTTTGGACCAGTTCCGATGGAAGGGGGTGAAAATCCATTGGTGGACATGTTAGACAACAACAACATTTTTGGTAACACAGAGCTTGATATGCCTGGCCTTGAGCCAATACCCCCCAAACCCAGTGAGCTTTCCACCTCCACCTACCAACCTCCTCCCCATCAGTTCTCATACTATCAGGATATGGCCAGTAATGGAGGAGAACGTTTACAGTGGGCATCTGATGATATTCCAGAATTCCTGAACACGATCCGCTCCGAGGTCGCTGTTTCATTGGCTGCTCCCCCTCCCCCATCCCAAAGCCTGGAGTCAAGCAGATTCCAGAAACTGAAAGAGGCCCGTAGTAAGAACCCAGTTAGTGGGCTGATGGAGTTTGCTCAGCATCTTGGACACACTTGTGAATTCCTACTTCTGGACCAGTCTGGACCCTCACATGACCCCCGGTTCCGGATGCAGGTCATGTTAGATGGCCGCAGGTTTCCACCAGCTGAGGGTTCAAACAAAAAAGTGGCCAAAAAAGATGCTGCAGCCACAACCCTGAGGATTCTTTGGAGGGAGATGAAGGGAGCAGGTGGAGATGAAGAGGAAGAACCGAGCTTTGAGGGAGCTGAGTCAACTACTGACCTGGCAGAAGATATGCCAAGTGGCACAGATACTCCGCCCCAGGCTCTGTCTCGGTCTCTACCTGGAGGAAAGAATCCTGTTTCTGTCCTGATGGAGCACAGTCAGCGCAGTGGGAATGCCATCCAGTTTATCAAGACAGGACAGGAAGGGCCTCCCCATGATCCACGGTTTATGTTCCGTGTAAAGGTTGGGGACCGTCTCTTCCAAGAAGCCTCAGCACCCAGTAAGAAAGCAGCGAAGCAGCTGGCAGCAGAGGAGGCTGTGAAAGAGCTAATGGGAGATGGACTACTACATCTTAACAAGCCTCCAGGTACTTTCCATTCTCTGGGCGACAACGAGTCTCAGCCAGCGATTCCTGCATGCCCCTCGCTACCCCCACTGACGGCATCTGAGCTCCAGGCGGCCCATGAAGCAGGTGTGGGTGACCTCATCAACCACCTGAACAACAACGCAGTGTCTGGCCTCCTCGAGTACGCCCGTGCTCGAGGCTTTGCTGCTGAAATCCGCCTGGTGGGCCAGTCCGGACTCTCACACGAGCCCAAGTTTACATACCAGGCTAAACTGGGAGGGCGGTGGTTTCCTGCAGTGTGTGCTAGTAATAAGAAGCAGGGGAAGCAGGAGGCAGCGGATGCTGCACTACGAGTGCTCATCGGAGAAGCAGAGAAAGCAGCACGTACTGGAGAGCTCACGCCAGAGTTGCCGGTATCAGGCAGTACGATGCATGATCAGATCGCCATGCTAAGCCATCAGCGCTTTAATGCACTCACAGCACGCATCCAGCACAGCCTTCTGGGTAGGAAGATTCTTGCTACCATCGTTATGAGAAATGGATCAGATACTCTTGGAACAGTTGTCAGCCTTGGGACAGGAAACCGCTGTGTTAAGGGAGAGGAGCTTAGTCTTCGAGGGGACACCGTTAATGACTGCCATGCAGAAATCATCTCCAGGAGAGGCTTTATCCGGTATCAGCTTGCAGCAGAACTTTCTCTCTCCCTCACTGTCAATCCCATAATTCGTTTTTCTTCTCATTCTACAGCTTTTTCCGTCTCATTCTTCAAGATGAAGGAGTCTTATTTCACAGCAGCTCATAAATATATTGACTTTATATTCGCTGTTCTGAAGATGTTACTGTTTTTGTACGGTCAGCTGATGAAGCATTGGGAAAGCCCTGGTGATGAGAGTATTTTTGAGGTTGCAGACGATGGTAAGCTGAAGATCAAATCTGACATCACCTTTCATCTCTATATTAGCACTGCTCCATGTGGCGATGGCGCTCTGTTCGATAAGTCGTGCAGCGAGGCCGCTGAAGAAAATGTGTCTGGACACATGCCTCTCTTCGAGAACGTAAAACAGGGCAAGCTCAGAACCAAGGTGGAGAACGAGGTTCTCTATAGCCACGTGAACGTGGCCTTTTGCCAGGCAAAACAGCCATTGTCTAGTGGGATAGAAGAAAAGCAATTACAAGGCAAAAACGGTTGGCAGGTAAGCGGAAGTGAAGGCACCATCCCAGTGGAGTCCAGTGATATTGTGCCCACCTGGGATGGCATTCAGCATGGTGAGCGCCTGAGGACCATGAGCTGCAGTGACAAGATCCTGCGCTGGAATGTGCTCGGCCTACAGGGGGCGCTCCTTAGCCACTTCATCCACCCCGTTTATTTGCGCTCCATCACTCTTGGGTATCTCTACAGCCATGGTCACCTGACTCGAGCTGTATGTTGCCGATTGGCTAGAGATGGTGATGCATTCAAAAAGAGTTTACCAGCAAACTTCACTCTCAACCACCCTGAGGTGGGACGGGTGAGTGTGTATGACTCCGCACGCCACACAAGTAAGACCAAAGAGTCCAGCGTTAACTGGAGTCAGCCAGACCAGCTCAGCGTTGAGGTACTGGATGGCACCAAGGGCAAAGTGGACAGTCTCAAGATGGAGGTATCACGGGTTTCCAAGTCCAATCTGTTCCGTCTCTTCCAAGCTTTGTGCCAGCGTGCGGGCCGAGCCGATCTGCTGGCACTGCCGTCCTATGCCCACGCTAAGATGGCTGCCACTTCATTCCAGGATGCCAAGAGGCTGTTCTTCCTGGCGCTGAACCAACATGGATATGGCGCCTGGATCGGGAAGCCCTTGGAAGAAAAAAGTTTTGAGGGAGAAGCCAGAGGCTCCGAGCTAAGGGCAGGAAGCGGGGACGTTCGTGCTCCGTGTTGCGCAGTTGACCCCAATAGCTGCTCGAGCTCAAACAACAATTTACAGTCTGCAGCACAGGGCTTTTAGGGATAGAGAGAGATGAAGAGAGAACAGATTAAGGGATGGATGGAGTGGAAGAGTGGCCGGCGGTTAAAAGAGAGCGAGAATTGAGGAGGTACAGAGAGGGAGGAACAGGGTAAGCCTGTGGCTTTGGATTTGAACTTTAACCATCATGACAAAGCAGAAACGGGTGCTGCTATGGCAACAGAGCTGTAAACCCAAGGCAAATTGGACTTGATGAGACATGAAGTAGAATCTTGCCTTTTTTTTTTTTTTTTCTTTTTTTTTTTAGAAAGCTATTACTACAGGGTTGCATTTGTTTTAGCGGGTTTTTTTCTTATTTGCGACCATCACAATACTTTGTTGTGTGACTGCGTGGCCACATAGCTGAAGAATAATTCTGTTTCTTTCTCTCTCGTAGTCTTTTTGATTCAAAATTATACATTTAGGTATTTCTCATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04860802_04872130.mRNA True 4831 mRNA 0.50 15 4860802 4872566

Neighbor

gene id symbol gene type direction distance location
CI01000027_04835989_04851147 SNX27.L, SNX27B, SNX27, SNX27A coding upstream 9624 4835989 ~ 4851178 (+)
CI01000027_04777135_04777760 NA coding upstream 81489 4776487 ~ 4779338 (+)
CI01000027_04774573_04774740 NA coding upstream 85824 4774573 ~ 4775489 (+)
CI01000027_04768212_04770488 KRTCAP2 coding upstream 90115 4768212 ~ 4770687 (+)
CI01000027_04725469_04727486 EFNA1B coding upstream 132519 4723893 ~ 4728283 (+)
CI01000027_04887494_04956477 KCNN3 coding downstream 14750 4887316 ~ 4957488 (+)
CI01000027_04978217_04987503 NA coding downstream 105651 4978217 ~ 4987503 (+)
CI01000027_05018992_05033275 NA coding downstream 145694 5018260 ~ 5034290 (+)
CI01000027_05050310_05055447 NA coding downstream 177744 5050310 ~ 5055755 (+)
CI01000027_05061061_05063086 APOEB coding downstream 187173 5059739 ~ 5063414 (+)
G140633 NA non-coding upstream 27542 4833012 ~ 4833260 (+)
G140475 NA non-coding upstream 34814 4824940 ~ 4825988 (+)
G140435 NA non-coding upstream 38157 4736894 ~ 4822645 (+)
G140436 NA non-coding upstream 81464 4737398 ~ 4774262 (+)
G140455 NA non-coding upstream 124134 4733708 ~ 4736668 (+)
G140454 NA non-coding downstream 549 4873115 ~ 4874023 (+)
G140640 NA non-coding downstream 9514 4882080 ~ 4882366 (+)
G140641 NA non-coding downstream 10013 4882579 ~ 4882895 (+)
G140642 NA non-coding downstream 10843 4883409 ~ 4883610 (+)
G140643 NA non-coding downstream 11119 4883685 ~ 4883910 (+)
G140440 NA other upstream 75142 4780417 ~ 4785660 (+)
G138953 NA other upstream 1340737 3502072 ~ 3520065 (+)
G138915 NA other upstream 1374155 3484387 ~ 3486647 (+)
G138515 NA other upstream 3183942 1664408 ~ 1676860 (+)
CI01000027_05069310_05070638 NA other downstream 196786 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 199496 5071693 ~ 5073136 (+)
G140862 NA other downstream 840046 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 884416 5756982 ~ 5758881 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009887 adar coding NC_007127.7 CM002900.2 23531583 ~ 23557714 (+)
mexican tetra (Astyanax mexicanus) G127109 NA non-coding NC_035910.1 CM008313.1 34968673 ~ 34969093 (+)