G139436


Basic Information

Item Value
gene id G139436
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1296520 ~ 1298787 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU158464
NNNTATATTATTTAACTATATTATATACATTTTAAGGCAACTGAATACCTAACCTTTAAGATTATAGAATATACTTTTAACATTTGTTTTCATACAATTCTTCTTTTATTAAGTAATGCATACTGTTTCGAGCTCTGTTGGCAGGGTTATAAGTCATGCTTGTGACCTTGTGGTCTCCAGACCCCTTCCAGCAATAGAGAAGCTAGTATGAAAATTACTTCTACCTTCATTTCAGAGCTGTCACTCCAGTTCAACAGTGACCTCTTCACCTCAACATCATGCAATATTACCTCACTGTGAATATAAAATATATTTGCAGTACCATGTGCCCCGTGGGTAAGTTAAATGTCTGAATGTAGATGCATGTTGGTTTTTATCATCTCATAAATATTTTAAGCAACCATAAGGATACTTATTGTATTTTACACCTTTGGACTGATAAAAATTCAGCTTCAGTTTTCCCATTGTTTAGACCCTGACATATTTTAATAGTCATGTGATGTCTCAGCTTGTGGTTAAAATGACAAATCTGGAGTCATTCCCCATAAATCATTCAGACGTGACAGTGATTGTTCCAAACTCTACTATAGCAAACAAATGGGGTGTTGTTGAGAAGTGCTTGAGTCACACGTGCTTAACCTCTAACTGATGTGACAATCTCAATTTAACAAGAGGCCTGGATGAACTATAGCAATGTTAAGAATGAAGTCGCCCGTAGCTATAGCGCTTAAACTTGAACATTGGCCACAAGGGCAAGCGGTCTGACTCTGGGAGGGTTGGCCAGCCAGATCAATAGTTGAGACGTCAAATTGAATTGAGGTCAGTCTTTGTGCATACGAGGTCTCTCATTTTTGGCTCTCTGTCAGGAAGCCAGCTGCTGAAGCGAAGCTCCTGCCCTGCGGCTGTTTTAGAGAGCGCACAAAGCCATACTGGAGAAATTTGGGACAATTGCTTATCAGGGGTGCTGAAATCAAAACCCCATTTACTTAGGGGTTTTTATTTGAAAATGAAATCAATTTCATTTTCCAAACATCCTTCCTGGAATCAAAATCCAGACCAATCACAGTCCCATAAAACTAATGACTGTGACTAAAAGAAATTCTTCCAGCACAGTCACTGGGACCAAAACTTCCACAGCATTTTAACAAAGTCATCTACCCTTTCTGTAGCTCTTATAAATCCTTAAAGAGGACCTGACGAGGATATGTGGCAATGGCATCAATATTGATGTGGGAGAAAGTCCCTCCAAAAACCCAGTTAAGCCACGGGGCATCAATATTAATGGTGCTGCATTGCCTCCCAACTGCCCCAGAGCAACTCTCAAATAGTGATTACCAAAGTGCAAGAGTTTCATTATTACACACCCCAAATAAAGGCATAATCTTTAATTTAAAGATTTGTAAATCTCCCTCCAAACTTTACATTTTAGATTCTCAAATGGGGATTCAAGAGTGTAATAAGTGAATTATTCAAAACTATGAATATAAACAGAGCTGGGTAGTAATGGATTACATGTAATCTGGATTACGTAATCAGATTCCAAAAATTAAGTACTTGTAATTATATTATATTATGTTTTAAAATACTCGTAATCAGACTACAGTTACTTTTTATTTATTGCATGATTACTTATTATTCACACAATGGCAGTAAATCATTCATAATCTATTGATTCTCCCTAATTCTTCTTTTTCATGTTTTAAATTGTCCTTTCTAAAAAAAACATATTGCTTTTATACATTCAGAAAGTCTTCTAGTTTTGTGAAATTTCACACAGAGACCAGCCACTAAGAATTTGACTACTTGATTTACAAAAATCATTTCATTTTAAAAGGAGTGCTTTCTAAACATTGCACATCAAATCAACTCCTGATGAACACATTAATTCATATTATAATTATTATTATCACTCAGTAAGTAATTTAAACATGTATATATACGTTGCAATATATTCTTTCTCTTTTTATATCAATATGGTAGAAGATTATCCTATTCAAATCAATGTTATAAATTAGTTAGGTCAAAAGTAATCTAAAAGTAGTCAGGTTATATTGCCTAAAATGTGTAATGTAATGGATTATGGTACTAACTACAATTTTTGTCATGTAATTTGGAATCAGTAACCGACTACAATTTTAAGTAATCTACCCAGCACTGATTATAAATTTTTATTAGCCTGTGAGAACTAGGCAGTTCTTAAAGGGTTAGTTTACCCAAAAATTAAAATTCAGTCATTAATTACTCACCCTCATGTTGCTCCACACCCGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU158464 True 2268 lncRNA 0.35 1 1296520 1298787

Neighbor

gene id symbol gene type direction distance location
CI01000027_01289962_01294748 NA coding downstream 1705 1289860 ~ 1294815 (-)
CI01000027_01254220_01254900 NA coding downstream 41569 1254129 ~ 1254951 (-)
CI01000027_01249889_01250572 RPZ coding downstream 45941 1249462 ~ 1250579 (-)
CI01000027_01241417_01245177 NA coding downstream 50253 1240478 ~ 1246267 (-)
CI01000027_01232167_01232844 NA coding downstream 62139 1231557 ~ 1234381 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 coding upstream 4072 1302034 ~ 1321178 (-)
CI01000027_01327656_01344105 NA coding upstream 28839 1327626 ~ 1344848 (-)
CI01000027_01354194_01354663 BOLA1 coding upstream 55255 1354042 ~ 1354663 (-)
CI01000027_01361532_01381534 SV2A coding upstream 62501 1361288 ~ 1382766 (-)
CI01000027_01420180_01439837 MTMR11 coding upstream 121335 1420122 ~ 1439837 (-)
G139432 NA non-coding downstream 20030 1276290 ~ 1276490 (-)
G139424 NA non-coding downstream 52807 1241803 ~ 1243713 (-)
G139412 NA non-coding downstream 79451 1216870 ~ 1217069 (-)
G139410 NA non-coding downstream 84920 1211385 ~ 1211600 (-)
G139443 NA non-coding upstream 26139 1324926 ~ 1325261 (-)
G139514 NA non-coding upstream 34525 1333312 ~ 1333538 (-)
G139457 NA non-coding upstream 162393 1461180 ~ 1462825 (-)
G139498 NA non-coding upstream 164206 1462993 ~ 1463312 (-)
G139487 NA non-coding upstream 252298 1551085 ~ 1557170 (-)
G139117 NA other downstream 1058941 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 1162718 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 1178217 108119 ~ 118408 (-)
CI01000027_02119227_02124423 NA other upstream 823343 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 927838 2225781 ~ 2227499 (-)
G140118 NA other upstream 2202747 3509352 ~ 3584679 (-)
CI01000027_03787377_03788902 NA other upstream 2488591 3787377 ~ 3790279 (-)

Expression


Co-expression Network