G138549


Basic Information

Item Value
gene id G138549
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1890773 ~ 1903525 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157416
AACCCACTCAGGACTGAGCCAACCTGTTGAGCGGATTGTGTAGGGTGTTGGTTTCTGTCTGTCTAGATCAGATCTTTACATGTGTTAAGGGTGGTTCCTCCACAACCACTTTTCAAACTTCAACGTTTCAGTTTCTTTCTCCTTGATAAAGGTTAAAACCACACTATCATGATGAAGACTTTGGCACTAGTTTTCATGACACTTTTTTCCCTTGTATTGGCGGAAGGTCAGCAGGCATCAGAGGAAGACCCCTTCTCTTTTGATTATCACAGACTTCGGGTTGGAGGTTTGATCTTGGCAGCAGTTCTGTGTCTGATTGGCATCACTATTCTCCTAAGTGGCCACTGTAGATGCAAATTCAACCAGGACAAAAGAAGGAGGACAGGAAGTAACGCTCAAGCGATGCTCAATGACACAGCAAGGGCCAGTGAATGCTAAAAACCTGCTGACCTGACCTGAACCAATCAGAGGAGACGGTCTGCCTTCTTTTATCCCATGTGCTGGTTTATCAGAGGAATTATTTCTCTTTAAGACGAGGAACCTAATACAAAGGTTTTCTGTGTTTTCACTGCTTATCTGCTCCAGATCATAGAGAAGGTGAAAATTCATATACCATTTTTTTTTTTTTATGCCAGTTGTCTTTGTAATGTCACTTAATATAAATTGATTACCAAAAAATGTATGTAAATTGTTTTTTATCCTGTCAGTAATTGTATTAAATTATGTTGGATATAGGTATGAAAGGGAAGGCTTTCAATGGCAGTGTCCTGATCTCATATGGAAACCTTTAACCAAATATGACTGTAAGCTTTAGTGGATCCATCCAATATTATACTGTTGCATTCTGTGTGAATTAGTTTACTGTTCAGACTTGCTTTGCAATTGAATAAGAAAATCTTGAATAAGAAAAGATCATGCTATCAAGAAAAAACAAACTCCATTATATTTACATTGAGATATTGTCATGTGCTTGATATTGTTTTCATTTCCAGCATATTCATCACAAACATGCTAGTAGTATTGAGAGTTTGTCTGTTTATCAGTTGTGTGAAAACTTGTCAGTATCATTCAAACATAAACACTAAAATAAACTAAAAGAAACTAAAACTAAAA
>TU157417
AACCCACTCAGGACTGAGCCAACCTGTTGAGCGGATTGTGTAGGGTGTTGGTTTCTGTCTGTCTAGATCAGATCTTTACATGTGTTAAGGGTGGTTCCTCCACAACCACTTTTCAAACTTCAACGTTTCAGTTTCTTTCTCCTTGATAAAGGTTAAAACCACACTATCATGATGAAGACTTTGGCACTAGTTTTCATGACACTTTTTTCCCTTGTATTGGCGGAAGGTCAGCAGGCATCAGAGGAAGACCCCTTCTCTTTTGATTATCACAGACTTCGGGTTGGAGGTTTGATCTTGGCAGCAGTTCTGTGTCTGATTGGCATCACTATTCTCCTAAGTGGCCACTGTAGATGCAAATTCAACCAGGACAAAAGAAGGAGGACAGGAAGTAACGCTCAAGCGATGCTCAATGACACAGCAAGGGCCAGTGAATGCTAAAAACCTGCTGACCTGACCTGAACCAATCAGAGGAGACGGTCTGCCTTCTTTTATCCCATGTGCTGGTTTATCAGAGGAATTATTTCTCTTTAAGACGAGGAACCTAATACAAAGGTTTTCTGTGTTTTCACTGCTTATCTGCTCCAGATCATAGAGAAGGTATGAAAGGGAAGGCTTTCAATGGCAGTGTCCTGATCTCATATGGAAACCTTTAACCAAATATGACTGTAAGCTTTAGTGGATCCATCCAATATTATACTGTTGCATTCTGTGTGAATTAGTTTACTGTTCAGACTTGCTTTGCAATTGAATAAGAAAATCTTGAATAAGAAAAGATCATGCTATCAAGAAAAAACAAACTCCATTATATTTACATTGAGATATTGTCATGTGCTTGATATTGTTTTCATTTCCAGCATATTCATCACAAACATGCTAGTAGTATTGAGAGTTTGTCTGTTTATCAGTTGTGTGAAAACTTGTCAGTATCATTCAAACATAAACACTAAAATAAACTAAAAGAAACTAAAACTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157416 False 1113 lncRNA 0.37 8 1890773 1903525
TU157417 True 975 lncRNA 0.39 9 1890773 1903525

Neighbor

gene id symbol gene type direction distance location
CI01000027_01878501_01881301 NA coding upstream 8526 1878501 ~ 1882247 (+)
CI01000027_01865502_01875022 HPN coding upstream 13834 1865502 ~ 1877374 (+)
CI01000027_01850735_01853042 NA coding upstream 37260 1850735 ~ 1853513 (+)
CI01000027_01843365_01850501 FCGR2A coding upstream 40272 1843365 ~ 1850501 (+)
CI01000027_01811625_01827803 RGL2 coding upstream 62591 1804199 ~ 1828182 (+)
CI01000027_01926296_01931553 NA coding downstream 22433 1925958 ~ 1931686 (+)
CI01000027_01937897_01954661 NA coding downstream 34229 1937754 ~ 1954787 (+)
CI01000027_01976509_01978931 NA coding downstream 72923 1976448 ~ 1980721 (+)
CI01000027_01982332_01985064 NA coding downstream 78509 1982034 ~ 1985157 (+)
CI01000027_01998746_02018404 NA coding downstream 95147 1998672 ~ 2018789 (+)
G138554 NA non-coding upstream 1090 1886234 ~ 1889683 (+)
G138558 NA non-coding upstream 50625 1834015 ~ 1840148 (+)
G138594 NA non-coding upstream 97393 1789756 ~ 1793380 (+)
G138610 NA non-coding downstream 5717 1909242 ~ 1909468 (+)
G138612 NA non-coding downstream 7758 1911283 ~ 1911551 (+)
G138625 NA non-coding downstream 58027 1961552 ~ 1961856 (+)
G138627 NA non-coding downstream 61807 1965332 ~ 1965606 (+)
G138515 NA other upstream 213913 1664408 ~ 1676860 (+)
G138436 NA other upstream 382957 1506961 ~ 1507816 (+)
G138290 NA other upstream 891592 995970 ~ 999181 (+)
G138247 NA other upstream 1021198 855388 ~ 893121 (+)
G138238 NA other upstream 1059090 829774 ~ 831683 (+)
G138915 NA other downstream 1580862 3484387 ~ 3486647 (+)
G138953 NA other downstream 1598547 3502072 ~ 3520065 (+)
G140436 NA other downstream 2833873 4737398 ~ 4774262 (+)
G140440 NA other downstream 2876892 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 3145398 5050310 ~ 5055755 (+)

Expression


Co-expression Network