G142248


Basic Information

Item Value
gene id G142248
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7335871 ~ 7354238 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU161636
GTTCCAGTGAGTGTGATGGGAGGGGAGAAGAGAAGCACGTCCTCTTGCAGGTATAAGTATACACGGCCCACCTCACGTGGTTTACTCTCAAACTCACGGTCCATGTAGAGTGGGGCTCCAACTAGCACGTCATCTAGCCCATCTCCATTTAGATCAGTCACTGCAATGGTGTATCCAAAATAAGAGGCCATCTGCTCCCCAGTAAAATTCTGAATAAACGTCAAGTTTGTTGCATTGATCACAGCCACATAACCAAAGTTGTGTGCTCCTCGAGGAACCCCTGCTACCAGTTCTTGTTCTGAATCACCTGTGAACTCTCCGACCGCTACAGAGTACCCTAGGTAACTGTCATCATATGTGTCTGATGCAGCCACAGTCTGCTTCTCTCCCTGAACTTTGCGCAGGATATTTTTCAGGGAATAGCCGTTCAATATTTCTGCAACTCCTGCAGTGATCACTTGACCTTGCCAGTAGAAACTCCCTGGTCCTCCCACAACCAGAGTCCCTTCCTTAGTGAAATCAACACTGAAGCCCGCCTGGCAGAAGCCCTGGCCCTCGGGGTCCGGGTTATTGGTTCTACAAGGTGAATACTCAGCGTAGGCACTGAAGTTCTGCACAGCCACATAACAGGTTCCCACTGGATCCATCTCACTGCTGACCTTCACTGTCCTCCAGTGATAGAGGGGAGCACAGGCCACTACTTTGCCTTTGTGGGTCCTGACTGTGGCTCCAAACCACTGATGGGATTTAAATTCTAGAGGCTCCCGTGTCCCATTCACTTTAATCATCCTGTTATTTGCTTTATCAAAGGGGATCTGGCGGCAGGAGTCTGGGTCTGATGCCGGCCAGGGACAGTAGTACACCGCTCCTCCCTCCACAATCCCTGGCTGAGAGGTGTTCGCTTTAGGAGCCCCAACCAGCACCGACATGGCGTTTCTGTCCTGTGTTGGGTGGTAAAAGTCCAGTGAGTATCCAAAATAACTTCCTTCTGGTCCATTGTAAACCGTTGGCTTTTCTAAATCCAGGTTAAAACCAGCAGCTTCGCAAAAAATTGAAAAAGTGAGCAAAAACCCACGAGAAAATACGCGGAATAACCAAGGATGCATGGCTTCAGCCCAGTTTCTCCAAATGTAATCCAAATGTTTTGATTTGAAGATGTGAAGACAGATTGTAAGGTATGTCCGTGCTCAGCTGTCATAAGTTTGAGTGTGCGCGCTCCATGCGTCTGCTGCTGCCTTCAAGCAAGCT
>TU161637
CTACTTGCTTTATCAAAGGGGATCTGGCGGCAGGAGTCTGGGTCTGATGCCGGCCAGGGACAGTAGTACACCGCTCCTCCCTCCACAATCCCTGGCTGAGAGGTGTTCGCTTTAGGAGCCCCAACCAGCACCGACATGGCGTTTCTGTCCTGTGTTGGGTGGTAAAAGTCCAGTGAGTATCCAAAATAACTTCCTTCTGGTCCATTGTAAACCGTTGGCTTTTCTAAATCCAGGTTAAAACCAGCAGCTTCGCAAAAAATTGAAAAAGTGAGCAAAAACCCACGAGAAAATACGCGGAATAACCAAGGATGCATGGCTTCAGCCCAGTTTCTCCAAATGTAATCCAAATGTTTTGATTTGAAGATGTGAAGACAGATTGTAAGGTATGTCCGTGCTCAGCTGTCATAAGTTTGAGTGTGCGCGCTCCATGCGTCTGCTGCTGCCTTCAAGCAAGCT
>TU161638
CCTTAGTGAAATCAACACTGAAGCCCGCCTGGCAGAAGCCCTGGCCCTCGGGGTCCGGGTTATTGGTTCTACAAGGTGAATACTCAGCGTAGGCACTGAAGTTCTGCACAGCCACATAACAGGTTCCCACTGGATCCATCTCACTGCTGACCTTCACTGTCCTCCAGTGATAGAGGGGAGCACAGGCCACTACTTTGCCTTTGTGGGTCCTGACTGTGGCTCCAAACCACTGATGGGATTTAAATTCTAGAGGCTCCCGTGTCCCATTCACTTTAATCATCCTGTTATTTGCTTTATCAAAGGGGATCTGGCGGCAGGAGTCTGGGTCTGATGCCGGCCAGGGACAGTAGTACACCGCTCCTCCCTCCACAATCCCTGGCTGAGAGGTGTTCGCTTTAGGAGCCCCAACCAGCACCGACATGGCGTTTCTGTCCTGTGTTGGGTGGTAAAAGTCCAGTGAGTATCCAAAATAACTTCCTTCTGGTCCATTGTAAACCGTTGGCTTTTCTAAATCCAGGTTAAAACCAGCAGCTTCGCAAAAAATTGAAAAAGTGAGCAAAAACCCACGAGAAAATACGCGGAATAACCAAGGATGCATGGCTTCAGCCCAGTTTCTCCAAATGTAATCCAAATGTTTTGATTTGAAGATGTGAAGACAGATTGTAAGGTATGTCCGTGCTCAGCTGTCATAAGTTTGAGTGTGCGCGCTCCATGCGTCTGCTGCTGCCTTCAAGCAAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161636 False 1248 lncRNA 0.49 12 7335871 7354238
TU161637 False 456 lncRNA 0.48 2 7335871 7336716
TU161638 True 740 lncRNA 0.50 5 7335871 7344580

Neighbor

gene id symbol gene type direction distance location
CI01000027_07291684_07291971 NA coding downstream 43900 7290753 ~ 7291971 (-)
CI01000027_07280569_07290167 NA coding downstream 45381 7280215 ~ 7290490 (-)
CI01000027_07190301_07196617 NA coding downstream 138869 7190071 ~ 7197002 (-)
CI01000027_07022724_07029894 STEAP4 coding downstream 305843 7022108 ~ 7030028 (-)
CI01000027_06975907_06983141 NA coding downstream 352188 6975907 ~ 6983683 (-)
CI01000027_07462193_07463023 NA coding upstream 107692 7461930 ~ 7463215 (-)
CI01000027_07473568_07489464 ABCB1, ABCB4 coding upstream 118661 7472899 ~ 7489775 (-)
CI01000027_07495449_07517906 ADAM15 coding upstream 141211 7495449 ~ 7517906 (-)
CI01000027_07520072_07528984 DCST1 coding upstream 165247 7519485 ~ 7528984 (-)
CI01000027_07564783_07576342 NA coding upstream 210354 7564592 ~ 7576800 (-)
G142182 NA non-coding downstream 6776 7326018 ~ 7329095 (-)
G142230 NA non-coding downstream 34166 7295372 ~ 7301705 (-)
G142223 NA non-coding downstream 153339 7182307 ~ 7182532 (-)
G142218 NA non-coding downstream 156397 7179196 ~ 7179474 (-)
G142205 NA non-coding downstream 189267 7146328 ~ 7146604 (-)
G142254 NA non-coding upstream 6702 7360940 ~ 7385491 (-)
G142289 NA non-coding upstream 74019 7428257 ~ 7467522 (-)
G142320 NA non-coding upstream 94535 7448773 ~ 7453604 (-)
G142307 NA non-coding upstream 185233 7539471 ~ 7542955 (-)
G143304 NA non-coding upstream 421165 7775403 ~ 7775628 (-)
G142209 NA other downstream 177873 7153623 ~ 7157998 (-)
G142203 NA other downstream 192808 7141094 ~ 7143063 (-)
G141638 NA other downstream 539164 6788627 ~ 6796707 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other downstream 1885508 5447424 ~ 5450461 (-)
G141588 NA other downstream 2134716 5108335 ~ 5201155 (-)
G142299 NA other upstream 84940 7439178 ~ 7440191 (-)
G143267 NA other upstream 315091 7669329 ~ 7673769 (-)
G143325 NA other upstream 530297 7884535 ~ 7886049 (-)
G144365 NA other upstream 3184542 10538780 ~ 10542148 (-)

Expression


Co-expression Network