CI01000028_03407831_03417774


Basic Information

Item Value
gene id CI01000028_03407831_03417774
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3407831 ~ 3418566 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_03407831_03417774.mRNA
GCTATTTGAGGTGGGAGCGGTGGCAGCTGGCACAGGGCGTCCATTAGGATACATGCCTCAGCTGAGCGCTGGACATGTGTGGAGCTGCTGGGAGCGGAGCAGGACTCGAGGCAGAGGAGGACAGGATGGAAGGGAGGAGGAGAAAGAGATGTCGGAGGGAATGATCAAACGAGAGGTGGAGGAGAGAGCTGGAAGAGAGTGGAAATGGATGAGACTGCATTGGAGAAACTGGCCGAAATGGAGTCAGTGTCTGGTTCCAATAGTAGCCGTGTGGTTGGTTGTTTTGGAGGAGTCTCCTCTGCACCCGTCCGTCAGTCTGACTGAAGCCACGGGTCGACTGCTCCTCGCCGGGCTGCTGTGTGCAGCGATGGCTCTTGGTGATTTAGCCTTCCGCTTCCTGATGTGTAATGGACAGAAAGTAAAGCAGAACCGCCCATACAATGATGAAGTGATTGTGAGAAAAACTGCTGAAAACCAGCAGCGGGCCAGTATAAATCCACAGCAGGATGCAGTTCATCTTGAATCCCAGGTTAATGTTCTAGCGGATGGTTTAGCGGTGTCCCTCCTCCACGAGCCCCTGCCGGACCCCAGCGAGCCCCACATACGAGGCCTCCTCACCAGACTAGAGACAGTGTCTCGGACTCTAAGCAGGGGTGGCTATGAGGAAGAGAAGGAGAAAAAGGACAAATGTGCACTTCAAGACAGAGTTAAACATATACGCTTTTATCTGCAGGACAGGATGAGCTCCCTGCGTTCTCTGCTGCAGGTTCAGCGGGAGTGTGAGGCGAGTGTGTGTGCGGTTCAGAGCTCTTTACAGAAGCGCTGGGCTCTGCTGGAGGACTTACACACCAGAGTGACTCTGAGCCCTGACAGCACACAGGAAAAACACGACCCTCACGCCGTCCTCACAGACACTGAGAGCCTGTTCGCAGAACTCAGTCAGTTCAAAAGCAGAGTCCAACAGTGCCGGACGCAGCTGGAAACCAATATAAACCTTTTACAGTTTTCTGAGATCCATGAGGATTTCACGTCTTTGGAACAGCAGACGTCAAATTTTGTGATCCACTTGAGAGGCCTGAATGCTTCTGAGGAGGAAAAGACAAGATTATCTCAAGATGATCTGGCACAAATCTCTGCACCGCCATCTCTTCCTGTTGTTCCTGTGTACATTGCTGCTCCGGAAGCAGCACAATCACATTCTGACCCAGAAAGTGATCCGGAGTCCCCAGAAGCCTCACAGAAAACCCACTCCAAAATGTCCCCCTTCCATATGCTGTGTGGGATGAAGAGGAGGAGGACATCGAAGTAGTTGATGGTTTTTACAGGACATTTTTAATGCCTAGTTTTTGTTGTTGTTGTTGTTTTTGACAGCCTGTTGAGCAGGTGTAACAACATGTTTTATGCACTTTATGCACATTTTAATATATATTGAACATTTTAATATGTATATATAACATATTTATATAAATATTCTGATTTTTTTTTGTTTTTTTTTTGGAATCTCTAAATAGTGTCTATACTGTGACTTGTGATTCTCTACTTGTAAAATGTGTAAATAAGATCTTTTTCATATGTATAATTAATAAAATAATATGAATAACATTATATTAAATATAGTACTGATTGGTTTTTATTAACATATAATATATACAGTAGTGGTGTCCAGAGGGGATATTTGTTTATAATGACCCTACAAATTCAATTAAACCATGAAAATATGAGGAAAATATTTTATTTTATTAAATATTTGAAATATGAGGGAAGAACAAACCTTTAAACTTGGTTAAGGTATATATCTTACAGATTTATTTAGGTAAACTACAGCTACAGGTTTCATTTTACTATTTTATTTTACAAAAATAATGCATAGAAAAACAAAAAGCTCACAGGGAAAAGCATACATTGACTACAACATAATCTATTATTAATATTTTCTTGGTTCTCCTGTTTTTTCATATAAGTTCATCATTTCTTTGCATGACAGCCTGGCCAAAAATTATGTCAGCATAATTTGGCATGTTTCATTGCATTATAACAAATAAAACAGTTGACTCCAAGCATGACTATGCAATATGCTTACAAAATCTTTAACAATATTGAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_03407831_03417774.mRNA True 2101 mRNA 0.42 9 3407831 3418566

Neighbor

gene id symbol gene type direction distance location
CI01000028_03385787_03404112 PRDM10 coding upstream 3615 3385542 ~ 3404216 (+)
CI01000028_03334040_03380006 APLP2 coding upstream 27278 3334040 ~ 3380553 (+)
CI01000028_03243337_03247393 SPRED3 coding upstream 159451 3240956 ~ 3248380 (+)
CI01000028_03232374_03235527 PSD8, PSMD8 coding upstream 172245 3232178 ~ 3235586 (+)
CI01000028_03155827_03157194 NA coding upstream 250637 3154001 ~ 3157194 (+)
CI01000028_03426799_03428872 NA coding downstream 6299 3424865 ~ 3430150 (+)
CI01000028_03522456_03524618 NA coding downstream 103403 3521969 ~ 3525207 (+)
CI01000028_03543288_03567292 CDON coding downstream 123587 3542153 ~ 3567666 (+)
CI01000028_03650532_03667920 BCL9L coding downstream 229839 3648405 ~ 3668011 (+)
CI01000028_03677140_03686568 DDX6 coding downstream 255878 3674444 ~ 3686976 (+)
G145895 NA non-coding upstream 1626 3405173 ~ 3406205 (+)
G145799 NA non-coding upstream 191405 3214609 ~ 3216426 (+)
G145801 NA non-coding upstream 195414 3209266 ~ 3212417 (+)
G145873 NA non-coding upstream 219678 3187781 ~ 3188153 (+)
G145870 NA non-coding upstream 246183 3161421 ~ 3161648 (+)
G146615 NA non-coding downstream 4759 3423325 ~ 3423603 (+)
G146617 NA non-coding downstream 5707 3424273 ~ 3424485 (+)
G146627 NA non-coding downstream 17256 3435822 ~ 3436115 (+)
G146635 NA non-coding downstream 48029 3466595 ~ 3482489 (+)
G146651 NA non-coding downstream 64602 3483168 ~ 3483393 (+)
G145843 NA other upstream 383611 3023146 ~ 3024220 (+)
CI01000028_00525538_00533862 NA other upstream 2885900 524647 ~ 535245 (+)
G147462 NA other downstream 1540137 4958703 ~ 4989838 (+)
G147636 NA other downstream 1797524 5216090 ~ 5216611 (+)
G147693 NA other downstream 2021888 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 4051326 7469543 ~ 7471432 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other downstream 4883681 8302247 ~ 8504940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013610 si:ch211-151h10.2 coding NC_007129.7 CM002902.2 44303153 ~ 44316920 (-)