CI01000028_08717545_08739805 (PPFIBP2A)


Basic Information

Item Value
gene id CI01000028_08717545_08739805
gene name PPFIBP2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 8717545 ~ 8740799 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_08717545_08739805.mRNA
GTCAATGTGCAAGGCCCAGGCAATGGTGAGAGCTACCAGGAGCGACTGTCTCGTCTAGAAGGGGATAAAGAGTCTCTTGTATTACAGGTGAGTGTGTTGACGGATCAGGTGGAGGTTCAGGGAGAAAAGATCAGAGACCTGGAGAATTCTCTTGGGGAATATCAGCACAAACTCCACTCCACTGAGGAGATGCTTCAACAGGAGCTTCTGAGCAGGAGTTCTCTAGAGTCACAGAAGCTGGGGTTGATGGAGAAAGTGTCCCATCTAAAACTGAAGCTGGGGAACATGGAGGACAAACACATCAACAATGCTGAGAGACAACATAAAGCTGAGAGCGTAGTGAATCTGATTAGTGAGCTTCAGGAGCAGATGTGTAGGATTCGGCAGGAGATCTCTGTTAAGATCCCAGAGAAGCCAGTGGAGATGGTCCCAGAGGAAGGTTGTGGCAGTGAGCCAGTGCAAGCCTTTCTGATTGAGCCAAAGCCAGTGAACCTGCTCCAGGAGCTCAAGACGCTCAAGCATCGAGTTGACGAGCTGGAACAAGAGAAGATGCAGTATGAGCAGAAGCTCAAGGTGACACAGGCAGAGATCATGAGTTTACAGCATCTGTTAAGCTGTAAGAACTCTGAAATAGAGAATCTACAGGCTCAGCTACTCTCCAGTGCTCCGGTGTCTGTGGACAGTGCAGAAAAAGATCAAGAGCTACAAAGTTTAAAGACAGGAATGGAATCACTTATTGCTGCCAATAATGAAAAGGTTTATAGAGATCGTCGAATAGAGGAGCTCACTCTCCTCCTTAGTCAGTTTAGAGAGATGAATGACATAATGACTTTAGTTCAAGGCACCGGAGACAAATCAGTACAGAACAGCAGCGAAGATGGAAAGCAGAATGGGACCGTAAAGATGAAGACTTTAACACATACAGCTCACACTGAGTTGACCTTCAGTAGCTCATCTCCTCTACTGCTGTCTTCAGTTTCTTCTCAGAAAGATGCAAACTCCAGGTCCATCAGTATGGAGGACTTTAAAAGCAGCTCAGCACAAAAGGTTGTGGATGGGAAACTGGTAGAGCCTGTTCTATCAGAGGAGATTCAACCAGCTGATAACAGACATCAGACACTCCCAGCAGTGTTGAGTCACCCAGAGAATAGAGACATGTGTTCTGGAGCCGACTCTGGCCAGCAGTCTCCTGTGTTACAGGAAAACATCAAAAATACCAGCATACGCAAACTTTGGGGAAAGATGAAGAGGACAGGTGTTCTGTCAGACGACTTGGAGCCCACTCAGTTCAGGAGAGGAGGGTTCAGGGCTACAGCTGGGCCACGGCTAACACGGACCCCTGATTCTGGACACTCATCCCGTTCCCACACACCCTTCTCTAAGTGGACGACAGAGCAGGTGTGTGGTTGGCTGGAAGACTGTGGTTTGGGTCAGTATGTCAGTTTGGCCCGTCAGTGGGTGGATAGTGGACAAACCCTCCTATCTGCCACCCCACAGGAGCTTGAGAAGGAGATTTGTATTAAACATCCTCTGCACAGAAAGAAGCTGCAACTCGCTCTAAGAGCTTTTAGTAACAAGACAATGGAGAAACCATCAGAACTGGATCACATCTGGGTTACACGTTGGCTTGATGACATTGGTTTACCACAGTACAAAGATCAATTCTACGAAAGCAAGGTTGATGGCCGCATGCTTCAGTATCTAACAGTGAACGATCTCTTGTTCCTGAAAGTCACCAGTCAACTCCATCATCTGAGCATTAAATGTGCCATCCATGTCCTCCACGTCAACAAGTTTAACCCAAACTGCTTGAGGCGCAGGCCAGGGGATGAGAATAAGACATCTCCCTCTGAGGTGGTGCAATGGTCCAACCATCGAGTGATGGAGTGGTTGAGGTCAGTGGATTTGGCTGAATATGCTCCAAACCTGAGAGGCAGCGGCGTTCATGGAGGCTTAATTATCCTAGAGCCTCGCTTTCACTCTGAGACCTTGGCCATGTTGCTCAACATCCCTCCTCAGAAAACCCTCCTCAGACGCCACCTCGCCACCAACTTCAGCATGTTGGTGGGGCTCCAGGCCCAACAGGAGAAACAAGAGTTTGCCAACGCCAGTGGGCACACACCCCTTACCACTACTGCCAAAGTCAGGCCAAAGAAGCTTGGCTTTACTCACTTCAGACAACTGAGAAAGCTCAGGATGGATGAATCAGCAGATTACATCTGCCCCATGGATACAGGAACCCCACCAGTCCACAGTGGGACACCAAAGCAGCCTTACGCAAGCTTCAGGGGCATCAGCCCTATCCTGACCAGAGACTCAGACAGACTTGAGCAGGTTGGGTCTAAGAGCTGATTCACTGCTTCTTCAGTCCAACCAATCTTAGCTAAACAATGCCACACTTACTGCCAGTAACACCACCAAGTGCCATCACTGCAGTAACACCACCTTGCTGCTTGAACCTCAGCATTAACAAGACAAGAACTGATTCTTCAGTGTATCATCTAGATATGCTGGAATAGACTCAGCATGGGCTCCAAATAAAAAATAAATAAATAAAACATCGAAAATTATTATTATTATTATTATTATTATTATTATTTGTCTTTAGGTAGTTCCAATGCTGAAATATCCTTTTGAAGGCTTACTTTGAGTTTCTTGATTTTATTACTTTTAACAAATAATTTATACCTATCCCTGGCACAAAAATGAGTTTTTGGTCTGTATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGTGTGTGGAAAACTTCTGCTGATTTGTTTACAAAAAATGAGTTTTGAAATCTCTA

Function

symbol description
ppfibp2a Predicted to be involved in neuromuscular junction development. Predicted to be active in presynaptic active zone. Orthologous to human PPFIBP2 (PPFIA binding protein 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_08717545_08739805.mRNA True 3346 mRNA 0.39 22 8717545 8740799

Neighbor

gene id symbol gene type direction distance location
CI01000028_08595383_08629444 SYT9, SYT9A coding upstream 88017 8595321 ~ 8629528 (+)
CI01000028_08302370_08504940 SPON1, SPON1A coding upstream 212605 8302247 ~ 8504940 (+)
CI01000028_08172067_08174791 NA coding upstream 542731 8167516 ~ 8174814 (+)
CI01000028_08134368_08134658 NA coding upstream 582855 8134368 ~ 8134690 (+)
CI01000028_08099613_08100202 NA coding upstream 617252 8099613 ~ 8100293 (+)
CI01000028_08769236_08770237 NA coding downstream 28437 8769236 ~ 8770237 (+)
CI01000028_08771015_08787659 NA coding downstream 29981 8770780 ~ 8787906 (+)
CI01000028_08899947_08900924 MAF coding downstream 158731 8899530 ~ 8900955 (+)
CI01000028_09008686_09011637 NA coding downstream 265601 9006400 ~ 9011804 (+)
CI01000028_09071285_09094934 NA coding downstream 330150 9070949 ~ 9094984 (+)
G150331 NA non-coding upstream 20105 8697213 ~ 8697440 (+)
G150325 NA non-coding upstream 25243 8692101 ~ 8692302 (+)
G150148 NA non-coding upstream 32695 8684391 ~ 8684850 (+)
G150141 NA non-coding upstream 49618 8667676 ~ 8667927 (+)
G150070 NA non-coding upstream 318422 8397468 ~ 8399123 (+)
G150364 NA non-coding downstream 4708 8745507 ~ 8745816 (+)
G150374 NA non-coding downstream 16749 8757548 ~ 8757831 (+)
G150424 NA non-coding downstream 127553 8868352 ~ 8868687 (+)
G150425 NA non-coding downstream 128486 8869285 ~ 8869822 (+)
G150426 NA non-coding downstream 136410 8877209 ~ 8877493 (+)
CI01000028_07470324_07471346 NA other upstream 1246845 7469543 ~ 7471432 (+)
G147693 NA other upstream 3263935 5440454 ~ 5453610 (+)
G147636 NA other upstream 3500934 5216090 ~ 5216611 (+)
G147462 NA other upstream 3727707 4958703 ~ 4989838 (+)
G150398 NA other downstream 50936 8791735 ~ 8792120 (+)
CI01000028_09661097_09682326 NA other downstream 932328 9660747 ~ 9684876 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location