G146174


Basic Information

Item Value
gene id G146174
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2029255 ~ 2034210 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU166086
CACTGTACGCAAATTTTATTTTGAAAAGATAAATACATTCAGGTATACCGTGACAGACTGGATACAGTTGTGTGCCTTCAACGCTGATATTAAAACACATTACTATTATGTTACTATGCGGAGAAAACCATAATGCCACCAGATTTCACATTTACACGTCAACTTTTACGTGACAAAACTGTACTTGTACTTTAAATATACTCTTTTATGTTCATACTTTTATATTCAAACGTTTACAGTAGTCTGCTGAGACTTTTGGTGCTGTAATCCTGTCTGTCCGCGCGTCTTTGCAATCGTAAAACCGAAAACTTATATTTCCATTTGCAGCCCAAAGGTACAATAGCTCACAATCTAGACTATTTACATCTAGCCAAAATAAAATCTCTTAAATAACACAAATACTAAACATAGAATTCAGTCTCAGAGGTACAATAAAATGACTGAACGTGTTCGCCAATGTAAACTTAAAACAACAAGTGTGGTTGGAATGGGATCTCACTATATTTCACTTTAAATACAACCATTAAAATATCTTTAAATCCCTACCCCAGAGCTCGCACGTCCATTATTCTTGATAAAAAGTCACGTTGTGCATTTGAAACGGTTTGTTGTACAGTAAAAATCCGCAAGCTACAAAACGTCAAGGCTGATCGGTTGGTTTAAACCATGTTCCTCTACGTTGGCCGGTAACTGGTGGATCTAAGTTTGCGTACGCGTAAAGACAGGAACATGCTTAATTTAAAGGGAAAATTCGTCAAATCACAATCTATGCGATATGCGAATGTGCATCTATAGCACATGTTTATGGACAAGGCATTTTTTCCTACAGTTTATCCCATAATTCCTGTTACCTAGCAAGGACATATACAAGTGTGACAGTGATGGAGGTATCGGAATAAAAGTTTGTAGTTTGTGTTGGTTGTAAGCTGTGAATCTTAATGAAGATATCAAATGTGGGATGTGCTGGTGATTAGAGATGGCACGTTCGGTACTAAGGAAGCCTCATGCTAAGGATTGTGGGATTGAGAGCCATGAATGCGTGTGGGCATCTTTGTAAACCTTGCTAACTTTTGATAAACAGAGTTTCACAGCTGAGCTCTAGAAAAACGTGCTGATGTACAGTCATGCCGGTGGTTGTGGATTGGTCTGTTGGATCTATGAGGCTTATGTTTACAGTTGAGAAAGTTGTGGTTGTGATGATGGGATGTTTGTTGGTGTTTTCACACTGGCTCCAGACTATATACGTGCTAGCACAGGACGGATATGTGGCGTCTCCAGCTCCGGGTCTGTAGATGGGTGGCGCTCTAGCGCTTGGTCTTCAGTATCCAGTCAAACAGGCTGGGCACTGGCCGTCCTCTCTGCTCCAGGTCCTGGTGGAGCTGACAGAACTGAGCCACAGCGCTGAACAAGTCACCAACACGCCAAGCCTTCTGACCTGCCAACTGCACCACTCTGTGGAACTGAGAAACAAACACACGCTGTTCAGTTCTTCATGCAGACGACTGCTGAGCCATGATCGTTCTTATCAACGGTCGGTGCAGTTAGGGGCCGTTCACATAGAACGCATTTTTGCATTCCACTGCACTGCTTTTCCGTTGGTTTTCTATGTAAACCCATTAGATGGATGTGTTTGACTGTTGCGCTCATGATCTTTAAGAATGTGCATGAATCAGTATTCTAAAAATGTGGCAATCAAGTTAAAAGAAGTTCAACTTTTAAGAAATGCATCTCTACACTGGAATCTCGTTTCTGCCATGAAATAAAACATAAAAAAGGCAATTGTGACTTTTTATCTCACAATTCTGACTTTTTTCGTAGAATTGCAAGATATAAACTCACAATTGTGAGTTATAAAGTCAGAATTGCGTCATATAAAGTCTGAATTACGTGATAAACTTGCAATTGCATGTTATAATGTGCAATTATGAATTTATAATCGTGCAATTCTGACTTTATAAGGCGCAATTGCGAGTTTAAATCTCACAATTCTGAGAAAAAAGCCAGAATTGTGACAAAGTCAGAATTGCATAATAAAAACTTGCAAAATATCTTGCAATTCTGACTTTACATGACTTTATATCTCACAATTCTGACTTTATAAGTCGCAATTCTGACTTTATAACTCAATTCTGACTTTATATCACACAATTCTGACTTTATAACTCACAATTCTGACTTTATGATGCAATTCTGACTTTATGACGCAATTCTGACTTTATACCTCAAAATTTTGACTTTATAATTCGCAATTGCAAGTTTAAATCTTGCAATTCTGAAAAAAAAAAAGTCTGAATTATGAGATAATTATTATCGCAATTATTGCCTTTTTTTAAAAGTTGCCTTTTTTATTTTTTATTTAGTGGCGGAAACAAGCTTTCATACTACACCTGGTGTTTTTAACAGCAAAAACGCATCGTCTGTGAATCGGCCCTTATACCATCATTTTTTTTGTGATCAACTTTTTATTAAATTTTTAACATTTACACATCACTATTCAACATACATCTAAACGTAACATACATTACACAATTGCCAAAGCTTAGCAGAACAAATGAAAAAAAAAGAAAGAAAAAAAAAGGGGTTGGGAATGTAAATGTAAATATTTTATGTAGCTTCTGAAGGGAAGTGCTAAATGAAAACATGATCTTTAAAGAAAAAAGAAAAATCCAATCATCGTCCTGTTCAAAAGTTTACAAAGCATTCACCTAAGACGTTTATGTAAAACAGCTTATTCAGGACATTACTAAAATAAAAAATAACATGCAATCTTTAGGATCCCTCTAATCATCCCTCTTAAAATGATTAACATCTTACACATTTGGCAAGGGATATACTGTATAAACTTATGAGCAATATATATATATATGTATATGTGTGTGTGTGTGTGTATGTATATATATATATATTATATATATGATATTGAAAAAAATCCAGTAATCACAAAAGTGGAGAAGTGTGAAGGCCTGTTTGCTAAGTGATTCTATGCAAAAACAAATGGTTTCAGCAATTATTTTATCCCATTTATCATTCCTAAAAATCTGTTAAAAACATTGGTTGCTACATAAGGATGACAATGGTTTATTTTATTCAATTCTTATATATATGGGCTAGTATGAATGATAAAAATAGCACCAACTCCACTGTCTTCTACCCTTTCAAAATACACATTTGAGGTATGACTGTGTAATTTTTGTTGTCGAACAAAATGTGAAAGTCTCCTCAGGTGATGTTAACCACGGACCTTATTTTACTCACAAATCGAAAACTGCTATTCTAAAAACCCATTAGAAATTCCTGAGGGAATCCATGCTAATTCTTTTTCAGGTTTGAGGACTAGAGTCTGAACAGCTCTATACCCCTGGAGCCTCGCTGAAGGGCACAATGATGATGGTTTGTGCCTCGTTCCTCTGCAGAGCTCAAATCAAATGTCAGTGCACTACACTGCCTCCATACACACTTCATCCTGTATTCCCTAAAAATAGTATATGAAACAGTATGTAATGTGCAGTGTTAAAATGCTTTGAAATTGTAATATGCAACACCGTAGTCACATAAACTGATTGGATTCAAGTTGTGTTTTCATTAGTACTATGAGAATAATAACTCGTCAGTATACTAGCTGGCAGGATCTGAGAAAGTTTTATTTATTTTTCTGTCTATACTGTGGTATAATGCAGATATGCAGAAATCTGTGAGTTCTGCAAGCGCAAATTCCATCCAATTTGGTAGTTATTCCAACAAACCGTTGCGCACGACCTCCGTTTGCCCTCACCTTTGCCCTCACCTTAGCGAGATTGTGCTCCGGGTTCTTTCTGAAGTAAAGAGCCGGCACGCCGAGCTCAGACGCAGCAATCCACTGGAGCGCTGCTCTTAGTTCTCCATCCACACACTCTGGTTCCAGGTCAAAGTTCAGCACCAGAAGCTCCCTTTGACAGCTGCTGCCGGCTGTGGACAAACCCGATGTGACTTCTGCCAGACAAAATGACACCAGTTACTTTGAGACACTTCTGTGCACGTTCTTCTGGATGAGATTTCTATAGATCTAATATGTTGCAAGCAGAATCTGAAGGACAGGTGTAGAACTGAGTAGCTCTAACAAACATACTTGTTTTAACTACAGGTGCATTTCTGAAGGAAGAAGCAGCAGTGCAATCCTCTCCGCTACAATGTTACCGTATTATGGGTCATTGCCAAGGCATTGCTATGCTGTTGCTAAGGTGTTCTGAGTGGTTGTTAGGTGGTATGATAAAAAGTCACATGGTCTGTTAAAGTCACAATGAAATCAAAATGGACAATTCTTATTACTTTAATCAGAATAACTTCCCCTCCCTCTTGCAGCGACATCTCTTCTCTTCTCTGATGACGTATTTACAGGCGCAAGGGCGGGGCAACCTGTCACTCACATGAGATCGACCAATAGCAAACCACAACCATCCAGTGATCCAATCAATTCCCCATGGACAAAATCAAGCCCCGCCCTACATTTTTTCTTGTTCCAGAAGTCGTTTCACTTGAACAGATGTCACAATAGGGAATAAAAGACCATCACAACTTCCGTTTCATGTCAACTTTAAAATGCAGGTTGCTAACAAGTTGCTACATAACTACAGTTGTATTTATTTTATTTTATTATTTTGTAGTATACATTGTCTAATATGAGTACTTAAAAACAGTACCAACTTTATTGGCCTCAAAAGTTTCAAAATTCATGTTTGGGTATGACTGTGTCATTTATGTTGTAAGTATATATATATATTTTTTTTTTCCTGTTTTGTACAGAGCCCCTAAAGGGACCTTTGCAAAAATAAAAAATATACAGTTTCGCGTGCGCACAAGAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU166086 True 4840 lncRNA 0.37 2 2029255 2034210

Neighbor

gene id symbol gene type direction distance location
CI01000028_01770721_01773265 NA coding downstream 255911 1769608 ~ 1773344 (-)
CI01000028_01707320_01709779 NA coding downstream 318649 1706758 ~ 1710606 (-)
CI01000028_01582515_01591864 NA coding downstream 437087 1582029 ~ 1592168 (-)
CI01000028_01403859_01408636 NA coding downstream 620575 1403706 ~ 1408680 (-)
CI01000028_01381059_01398155 BARX2 coding downstream 630898 1379172 ~ 1398357 (-)
CI01000028_02036977_02046469 DAW1 coding upstream 2099 2036309 ~ 2046469 (-)
CI01000028_02187324_02188153 NA coding upstream 152385 2186595 ~ 2188153 (-)
CI01000028_02190605_02195586 NA coding upstream 156358 2190568 ~ 2195964 (-)
CI01000028_02308696_02319050 MMP23BB coding upstream 274193 2308403 ~ 2319050 (-)
CI01000028_02327402_02338641 AP2M1, AP2M1.L, AP2M1A, AP2M1B coding upstream 292970 2327180 ~ 2338641 (-)
G146175 NA non-coding downstream 96 2019855 ~ 2029159 (-)
G146148 NA non-coding downstream 129309 1899695 ~ 1899946 (-)
G146134 NA non-coding downstream 150933 1878045 ~ 1878322 (-)
G146132 NA non-coding downstream 154819 1874034 ~ 1874436 (-)
G146131 NA non-coding downstream 155297 1873577 ~ 1873958 (-)
G146204 NA non-coding upstream 13065 2047275 ~ 2049898 (-)
G146232 NA non-coding upstream 91904 2126114 ~ 2129658 (-)
G146247 NA non-coding upstream 126727 2160937 ~ 2161304 (-)
G146251 NA non-coding upstream 139441 2173651 ~ 2173920 (-)
G146260 NA non-coding upstream 168155 2202365 ~ 2226354 (-)
CI01000028_00474810_00475211 NA other downstream 1553909 473609 ~ 475211 (-)
G144855 NA other downstream 1893379 135392 ~ 137202 (-)
G146190 NA other upstream 63360 2097570 ~ 2111265 (-)
G146238 NA other upstream 113168 2147378 ~ 2160038 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other upstream 407122 2441332 ~ 2445596 (-)
G149329 NA other upstream 4665303 6699513 ~ 6701240 (-)
CI01000028_06969947_06983352 NA other upstream 4936547 6965064 ~ 6984084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013072 NA non-coding NC_007129.7 CM002902.2 46394809 ~ 46399312 (+)