CI01000028_01582515_01591864


Basic Information

Item Value
gene id CI01000028_01582515_01591864
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 1582029 ~ 1592168 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_01582515_01591864.mRNA
ACAGCTTTTTAATGCCATGTCAGCAACTGAGGCTATCTTCATGGAAAAACGGAGTTACAAAAATACAAGAGTTGCAAAAATACAATAAAAATAAAAACCAAACATGATTCTGGATATGACTCTACAAAGCCACTTCATTACAACCCGTCAAAGGCCTGCAAGTATCCGCCCTTCAGCTCAACCATTGATTTTCTTTCATTTTTGGAACCTCAAAAGCAGGACATCCCATTGGGAGTCCTGTGCGAGTGGATAAAATAATACGTCCAAACAAAAAGCCCAAGAGAGCCAGACAGCATAGTCCAGAATGATGGTCTGGAACAGCAGGTGTGCAAAGCACTCGTATGACCCACAGCTCTCCTGTCACAAAGCAAAGACAAATGGCAGGACATCAAGGGCCGAGAATAAATACGTAACAGCCACGCTGCCGCAAAAGGCTTCCGTTCAAGACCAAGGTGAGCTGCCGTGTTTCTGCACATGTGTGAAGGGTCTCAGAGTGTTCTTCAGCAAACTGTCCTCCTCCAGCTTCAGCTGGGGTATAAGGTGTCCAAACGCCATCTATCCCCTCGGTTTAAAAAGGAGAGCACTCCATCCATCCGCCGTTCTCGGGATTACCGGGAAAATTAAAGGAGAGTGTCATGCGATCACCGACGCGCATGCGTGTCTGCATCAGCATCATTTCCACATGACTGCTCACGATAAAGCAGACAGGGACTCTTGGGCAAATACAGGCCCAAGTTCCTACATTTACAACAGTAAAATAATAACAAAAACCCCTCAAGATAACAGAGGAAAGCACAGTAAATGTTAAAAAAGCAATGTGGGAAAAAAAAAGAGACAAACTCACAGAGAAGATGTGTCATATTTACACTTACATATTCAGCCGAATACAGGTATGAACACAGAAGCAAAGCATTCCCAATATCTGACCTGTAGGCCATAACATGCAATCCCTTTGCTTTTCCAATGGAAAGAATTCCCTTTTTACACCCCTCAAAGTAACACATACTGCTACAGTTTCTAAGAGGAGTCGAAGGAGCCTTTTTTAGACATCCAGCATTATTTTAATAACAACCATGTTGAGTAACAATGATCAGGCTACATAGATAGTCAACGTCTTTTAAATAAGAGCGTTATGTCAAAAATACCTTGCAGATGGACCTTAACTGTTTTCCTGGCCTAAGCTCCCATTCAAAACTGAATGCCCTCATGCAATGTGAGCAACACTTCAGAATGCATTGGCGGCTCTAAGGAAGAGATGCTTTCTAAATACCACATTTAGCAGTGTTGAAATAAA
>TU165874
GTGAGCTGCCGTGTTTCTGCACATGTGTGAAGGGTCTCAGAGTGTTCTTCAGCAAACTGTCCTCCTCCAGCTTCAGCTGGGGTATAAGGTGTCCAAACGCCATCTATCCCCTGTGAGTCTCTCTTTGAGTCCTTAGATCAGTGATGAACTGAGCAGAAAACAGGGTTAGTTTCGAGTAGTGCAGCTGTCATTCAGAGCTATAGATTAGCGCTCGCGCTGCACAGAGGAAACAGCACATATTTTCCGTCCGTGGCGGGACAGTAAGTGATGAAACGGCGGTGTGATGCTCTGCAGACTCCTTCATCAGCTTTTCCCAGCGGTTTAAAAAGGAGAGCACTCCATCCATCCGCCGTTCTCG
>TU165876
GTATGACCCACAGCTCTCCTGTCACAAAGCAAAGACAAATGGCAGGACATCAAGGGCCGAGAATAAATACGTAACAGCCACGCTGCCGCAAAAGGCTTCCGTTCAAGACCAAGGTACGGCAGAGGAAGAGCTAGCGGCAGATCGGTCACAGTGCAATGCAGCAGCACAATGAACATTTATAGTGACTGAATCCAAAAATGCCCATATTATGGATATGTATAATATGAGTCAGATGAAAACAGACAAAAAGGACCAAACAAAACTAAAAGAATTTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_01582515_01591864.mRNA False 1294 mRNA 0.43 5 1582029 1592168
TU165874 False 358 lncRNA 0.51 1 1588814 1589171
TU165876 True 278 lncRNA 0.43 1 1591552 1591829

Neighbor

gene id symbol gene type direction distance location
CI01000028_01403859_01408636 NA coding downstream 173349 1403706 ~ 1408680 (-)
CI01000028_01381059_01398155 BARX2 coding downstream 183672 1379172 ~ 1398357 (-)
CI01000028_01011845_01028684 NA coding downstream 552424 1011608 ~ 1029605 (-)
CI01000028_00801939_00810126 SMTLA coding downstream 771903 801323 ~ 810126 (-)
CI01000028_00767836_00797742 NA coding downstream 782644 767679 ~ 799385 (-)
CI01000028_01707320_01709779 NA coding upstream 114590 1706758 ~ 1710606 (-)
CI01000028_01770721_01773265 NA coding upstream 178473 1769608 ~ 1773344 (-)
CI01000028_02036977_02046469 DAW1 coding upstream 444141 2036309 ~ 2046469 (-)
CI01000028_02187324_02188153 NA coding upstream 594427 2186595 ~ 2188153 (-)
CI01000028_02190605_02195586 NA coding upstream 598400 2190568 ~ 2195964 (-)
G145955 NA non-coding downstream 4120 1577636 ~ 1577909 (-)
G145967 NA non-coding downstream 48570 1520721 ~ 1533459 (-)
G145954 NA non-coding downstream 93083 1488472 ~ 1488946 (-)
G145951 NA non-coding downstream 94426 1487224 ~ 1487603 (-)
G145946 NA non-coding downstream 98005 1483800 ~ 1484024 (-)
G146052 NA non-coding upstream 127857 1720025 ~ 1722574 (-)
G146064 NA non-coding upstream 158831 1750999 ~ 1755540 (-)
G146117 NA non-coding upstream 224658 1816826 ~ 1834020 (-)
G146122 NA non-coding upstream 245907 1838075 ~ 1838276 (-)
CI01000028_00474810_00475211 NA other downstream 1106683 473609 ~ 475211 (-)
G144855 NA other downstream 1446153 135392 ~ 137202 (-)
G146190 NA other upstream 505402 2097570 ~ 2111265 (-)
G146238 NA other upstream 555210 2147378 ~ 2160038 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other upstream 849164 2441332 ~ 2445596 (-)
G149329 NA other upstream 5107345 6699513 ~ 6701240 (-)
CI01000028_06969947_06983352 NA other upstream 5378589 6965064 ~ 6984084 (-)

Expression


Co-expression Network