CI01000028_00801939_00810126 (SMTLA)


Basic Information

Item Value
gene id CI01000028_00801939_00810126
gene name SMTLA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 801323 ~ 810126 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_00801939_00810126.mRNA
GTGAAAGGCCTGCATATGAAGGAGTCTGAGGAGAAGGCCACGTCTCTTCTTACACTCAAGCAGGTCTGGCTGTGTTGTGTGTCTCTGTGCCGCTTCTGGGTTTCTCATGCCGTTCCTCTGGACTGCAAGGACGAGACGGGATCTCTCACCCACTGTACTTCAATCTCCCAAGAGAAACTTCTAGATCGTGTCATCCAACACGCAGAGCTCATCTACCGTGTCTCTGAAGAGTCATGCACTCTTTTTGAGGAGATGTTTGTCCCATACCCTCTGCATACTTTAAGAAATCAGGCAGGAAACATGTGCCACAGCAAGCCCTTCCCGATCCCAGGCTCCAAGAGTGAGATTCAGCAGATATCGGATACATGGCTCCTTCACTCGGTTCTGATTCTGGTGCAGTCGTGGATGGAACCCCTGCTCTATCTGCAAACTACTCTTGATCGTTACGACGACGCCCCCGACGCTCTGCTCAACAAGACCAAGTGGGTGTCTGATAAACTGCTCAGCCTTGAGCAGGGGGTGGTGGTCCTCATCCGCAAGATGCTGGATGAAGGGATTCTGATGTCCTCGTCCGTCATCGAGCAGACGCTGGCCCCAAACGACGGACAGTCTCCAGAGGTGCTGGAGTCTGTCCTCAGGGACTACAACCTACTCACCTGCTTCAAGAAGGACGCCCACAAGATGGAGACCTTCCTCAAGCTACTCAAATGCCGCCAGAGCAACAAGCTCAGTTGTCTTTCCCACTAAACATGCTTCTTATATGGAAAGAATATGCTTTATTCTGAAGAATTGAATGTGTACATTGAATTAGCTTTCTTACCCTAGTTAGCAAACATTAAATGAGACCCCTGAGTGTGAAAGTGATGTGCTCAAAGCTGTGGCTTTCTGGATATTTACTGTAAATTGAAGAGGAACAGGAGACGAAGCATATCTGTATACTGCACTATTGATTTCCTCCCTTCTCTTCCAAACTTTGTATGCGATACAGACTCTACATAGTTTTTCAATGTCTCTACAGATAGTTTCACCGTTGTATTAGTTAGACAGAAAAGCTCCTGATACAGAAATATGCTAATGAAGCCTCAAAGCAGACTGTAAATGTTTCCAGACTGTGGTGTGGGCTGAGGGATTTGATCGAAGCTTTACTTTATGGATGAACATAGAGGAAATTTACATGAGACATGACATGAGATAAAAATATAACTTCTGGCCAGCCCAAGAGAAAGAACAGAGTGAATTAATTATGTAAATTGTGTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAACAATATACACAACGTGATATGTATATGCATATTTTTTCTTTATCTTTATCAAATTATACTTATCTATGTAAATAAA

Function

symbol description
smtla Predicted to enable growth hormone activity and growth hormone receptor binding activity. Predicted to be involved in several processes, including growth hormone receptor signaling pathway; positive regulation of receptor signaling pathway via JAK-STAT; and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in hypophysis and pars intermedia. Human ortholog(s) of this gene implicated in several diseases, including anemia (multiple); autoimmune disease of endocrine system (multiple); diabetic retinopathy; isolated growth hormone deficiency (multiple); and progeria. Orthologous to several human genes including CSH1 (chorionic somatomammotropin hormone 1); CSHL1 (chorionic somatomammotropin hormone like 1); and GH1 (growth hormone 1).

NR:

description
somatolactin, SL

GO:

id name namespace
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_00801939_00810126.mRNA True 1363 mRNA 0.44 5 801323 810126

Neighbor

gene id symbol gene type direction distance location
CI01000028_00767836_00797742 NA coding downstream 1938 767679 ~ 799385 (-)
CI01000028_00704858_00705817 NA coding downstream 94556 704770 ~ 706767 (-)
CI01000028_00616942_00640490 FLI1, FLI1A coding downstream 159147 616390 ~ 642176 (-)
CI01000028_00563476_00575567 KCNJ5 coding downstream 222958 562111 ~ 578365 (-)
CI01000028_00534236_00534848 NA coding downstream 266475 534207 ~ 534848 (-)
CI01000028_01011845_01028684 NA coding upstream 201482 1011608 ~ 1029605 (-)
CI01000028_01381059_01398155 BARX2 coding upstream 569046 1379172 ~ 1398357 (-)
CI01000028_01403859_01408636 NA coding upstream 593580 1403706 ~ 1408680 (-)
CI01000028_01582515_01591864 NA coding upstream 771903 1582029 ~ 1592168 (-)
CI01000028_01707320_01709779 NA coding upstream 896632 1706758 ~ 1710606 (-)
G145048 NA non-coding downstream 72831 728270 ~ 728492 (-)
G144988 NA non-coding downstream 75323 664690 ~ 726000 (-)
G144992 NA non-coding downstream 84676 711052 ~ 716647 (-)
G145009 NA non-coding downstream 243479 557592 ~ 557844 (-)
G144989 NA non-coding downstream 267123 525846 ~ 534200 (-)
G145108 NA non-coding upstream 27226 837352 ~ 837568 (-)
G145113 NA non-coding upstream 37119 847245 ~ 847492 (-)
G145141 NA non-coding upstream 124350 934476 ~ 934739 (-)
G145152 NA non-coding upstream 151990 962116 ~ 962531 (-)
G145155 NA non-coding upstream 162820 972946 ~ 1057319 (-)
CI01000028_00474810_00475211 NA other downstream 325977 473609 ~ 475211 (-)
G144855 NA other downstream 665447 135392 ~ 137202 (-)
G146190 NA other upstream 1287444 2097570 ~ 2111265 (-)
G146238 NA other upstream 1337252 2147378 ~ 2160038 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other upstream 1631206 2441332 ~ 2445596 (-)
G149329 NA other upstream 5889387 6699513 ~ 6701240 (-)
CI01000028_06969947_06983352 NA other upstream 6160631 6965064 ~ 6984084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004487 LOC100136491 coding CM030121.1 CM030121.1 51021338 ~ 51025994 (-)