G144992


Basic Information

Item Value
gene id G144992
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 711052 ~ 716647 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU164754
GAGCGCAGCTGCCGGGATGACCGGTTTGTCCTTGCTGAGGTCCGAGCGCTCCCGCACGTAGTCTTTGAAGGTGCCCTTTGGTTTGTGTCCGTGCAGTGCAGTGGGATAGTCCTCCGAGTCAAAGCTGTCGTAGGAGGGAACTCTCTGTAGGCTGTTGAACGACGACTGACTACTCCAGGACTGCGTCAGCCTGTCGCAGCTCTCGAAACTGTCGATGCTCTCAAACGAATCTTGACCTCCCAGCTTACCTCTACTAATGCGACCCACACACATGTTGTCAGGTGACACAACTTCCTGTTTGACTGAAAAATAGTCTCCCTGCAGTGGATTGAGAGGTGTGTCTCGCAGTATAACGTTTGGATACTCGCTCTCGTATTTGAGTGACAGCAGGTCTTCCGAGCTGATGGGGTGAAGGGTCTGGTAAGACTCTGTTATGAAGCTAGGCTCTGAGTATTCGGAAGGAGGGACACACTGAGGATGCTCAATGCCATAGTTGAAAAAGTAGTCTGAGGGGTAGCGGGATTCCTGGAAACTGGAGGTCAGACCGTTGACAGGGAAATGCTTCGGGTCTTCTTTTTGCAGCATCTCTAAATGTTCCCAGAGGATGTCGCCCACAAAGTCGGGTGCCAGGTCCAGGAAGCGCTCTTTGCCCAGTGCACAGAGATTGGCCCCGTCCATGCTGAACTTATGGAAGTCCACATTCTTCAGACTAAACTCATTTACCGTCCAGGTCAACCATTCTCTCACGTGCGCCTCCGTCCACTCGCGGGGGTCTTTAGGTATGGAGAGTCGCTGTTGTTCCCTGGTGAAGCCGCTGAAAGTGGCCAAAAGAGCCTGTGACATCATTTCTTTACTTCCTGGAGTCAGTAAAGGAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU164754 True 877 lncRNA 0.52 5 711052 716647

Neighbor

gene id symbol gene type direction distance location
CI01000028_00704858_00705817 NA coding downstream 4285 704770 ~ 706767 (-)
CI01000028_00616942_00640490 FLI1, FLI1A coding downstream 68876 616390 ~ 642176 (-)
CI01000028_00563476_00575567 KCNJ5 coding downstream 132687 562111 ~ 578365 (-)
CI01000028_00534236_00534848 NA coding downstream 176204 534207 ~ 534848 (-)
CI01000028_00474810_00475211 NA coding downstream 235841 473609 ~ 475211 (-)
CI01000028_00767836_00797742 NA coding upstream 51032 767679 ~ 799385 (-)
CI01000028_00801939_00810126 SMTLA coding upstream 84676 801323 ~ 810126 (-)
CI01000028_01011845_01028684 NA coding upstream 294961 1011608 ~ 1029605 (-)
CI01000028_01381059_01398155 BARX2 coding upstream 662525 1379172 ~ 1398357 (-)
CI01000028_01403859_01408636 NA coding upstream 687059 1403706 ~ 1408680 (-)
G145009 NA non-coding downstream 153208 557592 ~ 557844 (-)
G144989 NA non-coding downstream 176852 525846 ~ 534200 (-)
G144965 NA non-coding downstream 189122 491915 ~ 521930 (-)
G144981 NA non-coding downstream 203650 506152 ~ 507402 (-)
G144963 NA non-coding downstream 238634 472107 ~ 472418 (-)
G145048 NA non-coding upstream 11623 728270 ~ 728492 (-)
G145108 NA non-coding upstream 120705 837352 ~ 837568 (-)
G145113 NA non-coding upstream 130598 847245 ~ 847492 (-)
G145141 NA non-coding upstream 217829 934476 ~ 934739 (-)
G145152 NA non-coding upstream 245469 962116 ~ 962531 (-)
G144855 NA other downstream 575176 135392 ~ 137202 (-)
G146190 NA other upstream 1380923 2097570 ~ 2111265 (-)
G146238 NA other upstream 1430731 2147378 ~ 2160038 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other upstream 1724685 2441332 ~ 2445596 (-)
G149329 NA other upstream 5982866 6699513 ~ 6701240 (-)
CI01000028_06969947_06983352 NA other upstream 6254110 6965064 ~ 6984084 (-)

Expression


Co-expression Network