G146052


Basic Information

Item Value
gene id G146052
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 1720025 ~ 1722574 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU165933
TATTTGGGTATGAACAAAAACACGCTGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCGGCCCCCTTCTCAGAAGAGGGCGGAGCTTTAACAGCCTGCGCTTCAACAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACAGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGATGTTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGATGTGGAGTTAAGTTGATTCATTCGACTAGCATGTACCGTCATGTTAATCTCTTGTGCAAATCCAGCGTAGAACATTTGTAATGTTTTTTGCACAGATATTGTATATCTCCAGCTGCTAAACCAAGGAAACAGAAATGGCGGACTGCTGCAGCTCATTTAGGGTGGTATCTATGCTAATAGGGCAGAGTGTTGCCAGTTATGGGCGGGTCTTCTGGAATCTGGAACCGCGCATTTGCAGAGACTGTTTATGTTTTATGGCAGTGGTCTCAAACTCAATTCCTGGAGGGCCACAGCCCTGCACAGTTTTGCTCCAAGCCTAATTAAACACACTTGATCCAGCTAATCAAGGTCTTTAGGATTACTAGAAACTTCCGAGCAGGTGTGAATTTGAGCTGGCTGGAGCTAAACTCTGCAGGTCTGTGGCCCTCCAGGAACTGAGTTTGAGACCACTGTTTTATGGGGATTATAAAAAAAGGAATGGGTGGATTTTTACCATTATAGGCTGGTTGTTTACACACATCTGTGTTCAAACCCCTTATAAAAGTGAATTTTGCATAATAGGTCCCCTTTAAGAGTTTACTAGTTTTCATAATGTAGAGAATGTATTAATGTACATGATAAATATAATAAACTAGATGAGGTGAAATAAACCATGCGTATGATTTGACGTTCTCTTGATTTTTGCTTATGTTCAGTTGCAATAATTCTAATGAAATGTAAAAAGAAATGGTGACACTTCATTTTAAGGGGACGTAGTTACACATCTTGCATGTACTTCCTATAGAAATAACAGTAAATGATGCATAATTACAAGTAACTAATCCTAAACGAAACGCTAACCCTAAATAAGTACATGTATGTTTAATTAATATTACTCAGTACACTGTAACAACGTCACCTTAAAATAAAGTGAAACCAAAGAAATTTCTCAAACGAGAACAATTAAATATTAATAACAATGAACAATTTAACCATTACTGTGCAGGCCAAAGTCAAATTCTTCATCTCTTTAACTATCAAACTATTATGCAGAATAAATGAATCATAATTAACAAATACGGCTGCTAACAGGAAAGCGGATGGAGAGAAAGGAATCTGTGTATTTGTTTAAACAAACACTTGCATTCACACAAACAGGCAGAGTCAGACAAGACAAATCAATAACAGCGAAACAGATCACTGGAGGAGGTATGCAGACACAGCGGGTGTAAATAAGGGCGAGAGACTGAGTGAATACAGAACAGAAGAGAGAAATGCTTACTTTGGAAAGTCGCTTGTGAGACTAGCATGCATCGAGGAGAAAAACAGAAATCAGAAAACGGAACACAAATCAGAACAACCACAAACAGTGAGAAGAACATGATAGTCAAGTTTAGATCAAAGACATTTTATATGACATCAGCAAAAGTATTGGACTCTAGAAAGAAAAAACAGCAGAGTGAGTGACAAAATGAAAGAAAACAGGAAGAACAAGCGACTGTAACAGCTGAAATGAGACAGAATGATGACGTGAGCTAATCTGCATTTTTTTTTATAAATCATTTCACATAACGGCAGAGCTTCATCTCTTCATTCACACTATCCACCCGTCCATTCATGCATTCATTCATTTCCACATGTGAATGTGATTTTTGAGATGTTTGGCATAGAAACATAGACATAGAAAGCTGCATAAACAAATCATATATTGTTTAGCTCAATTTATTAGCGTTTCTTAAAAATATTAATATACGTATATATCTCCAGGTCATGAAGTCATTTGTTATATGTGTCTCCATCAAGGAGGTTTGTAATATAAATCTGTTCATAAGCATTCACAGCAGACAACAGAACTGTTTTTGAATGTCTGCCAGTATAAAAAGATGCTTTTTGGAAACACATGGTGTAATTATATCTACCAGCAGGGGCTAACTGGACAATGCTTGTCTAACTTAGTCACATTTTTTGATAGATTTTCCTATTTAGTTTACATGCCCAATTAATTTTATTTTTTTTTCTTCTTTTTTTTGTTTTGTTTATTTTTTTTTTTTTTTTTTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165933 True 2336 lncRNA 0.36 2 1720025 1722574

Neighbor

gene id symbol gene type direction distance location
CI01000028_01707320_01709779 NA coding downstream 9419 1706758 ~ 1710606 (-)
CI01000028_01582515_01591864 NA coding downstream 127857 1582029 ~ 1592168 (-)
CI01000028_01403859_01408636 NA coding downstream 311345 1403706 ~ 1408680 (-)
CI01000028_01381059_01398155 BARX2 coding downstream 321668 1379172 ~ 1398357 (-)
CI01000028_01011845_01028684 NA coding downstream 690420 1011608 ~ 1029605 (-)
CI01000028_01770721_01773265 NA coding upstream 48067 1769608 ~ 1773344 (-)
CI01000028_02036977_02046469 DAW1 coding upstream 313735 2036309 ~ 2046469 (-)
CI01000028_02187324_02188153 NA coding upstream 464021 2186595 ~ 2188153 (-)
CI01000028_02190605_02195586 NA coding upstream 467994 2190568 ~ 2195964 (-)
CI01000028_02308696_02319050 MMP23BB coding upstream 585829 2308403 ~ 2319050 (-)
G145997 NA non-coding downstream 128724 1591078 ~ 1591301 (-)
G145955 NA non-coding downstream 142116 1577636 ~ 1577909 (-)
G145967 NA non-coding downstream 186566 1520721 ~ 1533459 (-)
G145954 NA non-coding downstream 231079 1488472 ~ 1488946 (-)
G146064 NA non-coding upstream 28425 1750999 ~ 1755540 (-)
G146117 NA non-coding upstream 94252 1816826 ~ 1834020 (-)
G146122 NA non-coding upstream 115501 1838075 ~ 1838276 (-)
G146106 NA non-coding upstream 116351 1838925 ~ 1855036 (-)
G146103 NA non-coding upstream 144737 1867311 ~ 1871322 (-)
CI01000028_00474810_00475211 NA other downstream 1244679 473609 ~ 475211 (-)
G144855 NA other downstream 1584149 135392 ~ 137202 (-)
G146190 NA other upstream 374996 2097570 ~ 2111265 (-)
G146238 NA other upstream 424804 2147378 ~ 2160038 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other upstream 718758 2441332 ~ 2445596 (-)
G149329 NA other upstream 4976939 6699513 ~ 6701240 (-)
CI01000028_06969947_06983352 NA other upstream 5248183 6965064 ~ 6984084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017960 NA coding CM030131.1 CM030131.1 30462864 ~ 30487284 (+)