Gene
RNA
| Item | Value |
|---|---|
| gene id | G146106 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000028 |
| NCBI id | null |
| chromosome length | 9874160 |
| location | 1838925 ~ 1855036 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU166014 | True | 369 | lncRNA | 0.51 | 2 | 1838925 | 1855036 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000028_01770721_01773265 | NA | coding | downstream | 65581 | 1769608 ~ 1773344 (-) |
| CI01000028_01707320_01709779 | NA | coding | downstream | 128319 | 1706758 ~ 1710606 (-) |
| CI01000028_01582515_01591864 | NA | coding | downstream | 246757 | 1582029 ~ 1592168 (-) |
| CI01000028_01403859_01408636 | NA | coding | downstream | 430245 | 1403706 ~ 1408680 (-) |
| CI01000028_01381059_01398155 | BARX2 | coding | downstream | 440568 | 1379172 ~ 1398357 (-) |
| CI01000028_02036977_02046469 | DAW1 | coding | upstream | 181273 | 2036309 ~ 2046469 (-) |
| CI01000028_02187324_02188153 | NA | coding | upstream | 331559 | 2186595 ~ 2188153 (-) |
| CI01000028_02190605_02195586 | NA | coding | upstream | 335532 | 2190568 ~ 2195964 (-) |
| CI01000028_02308696_02319050 | MMP23BB | coding | upstream | 453367 | 2308403 ~ 2319050 (-) |
| CI01000028_02327402_02338641 | AP2M1, AP2M1.L, AP2M1A, AP2M1B | coding | upstream | 472144 | 2327180 ~ 2338641 (-) |
| G146122 | NA | non-coding | downstream | 649 | 1838075 ~ 1838276 (-) |
| G146117 | NA | non-coding | downstream | 4905 | 1816826 ~ 1834020 (-) |
| G146064 | NA | non-coding | downstream | 83385 | 1750999 ~ 1755540 (-) |
| G146052 | NA | non-coding | downstream | 116351 | 1720025 ~ 1722574 (-) |
| G146103 | NA | non-coding | upstream | 12275 | 1867311 ~ 1871322 (-) |
| G146131 | NA | non-coding | upstream | 18541 | 1873577 ~ 1873958 (-) |
| G146132 | NA | non-coding | upstream | 18998 | 1874034 ~ 1874436 (-) |
| G146134 | NA | non-coding | upstream | 23009 | 1878045 ~ 1878322 (-) |
| G146148 | NA | non-coding | upstream | 44659 | 1899695 ~ 1899946 (-) |
| CI01000028_00474810_00475211 | NA | other | downstream | 1363579 | 473609 ~ 475211 (-) |
| G144855 | NA | other | downstream | 1703049 | 135392 ~ 137202 (-) |
| G146190 | NA | other | upstream | 242534 | 2097570 ~ 2111265 (-) |
| G146238 | NA | other | upstream | 292342 | 2147378 ~ 2160038 (-) |
| CI01000028_02441408_02445596 | RPL35A, GM10247 | other | upstream | 586296 | 2441332 ~ 2445596 (-) |
| G149329 | NA | other | upstream | 4844477 | 6699513 ~ 6701240 (-) |
| CI01000028_06969947_06983352 | NA | other | upstream | 5115721 | 6965064 ~ 6984084 (-) |
