Gene
RNA
| Item | Value |
|---|---|
| gene id | G147327 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000028 |
| NCBI id | null |
| chromosome length | 9874160 |
| location | 4316775 ~ 4317277 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU167345 | True | 503 | lncRNA | 0.31 | 1 | 4316775 | 4317277 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000028_04240962_04247433 | NA | coding | upstream | 68353 | 4240122 ~ 4248422 (+) |
| CI01000028_04224432_04233899 | NA | coding | upstream | 82563 | 4224226 ~ 4234212 (+) |
| CI01000028_04216684_04219734 | NA | coding | upstream | 96998 | 4215386 ~ 4219777 (+) |
| CI01000028_04145294_04156879 | NA | coding | upstream | 158122 | 4144943 ~ 4158653 (+) |
| CI01000028_03946366_03958585 | NA | coding | upstream | 356952 | 3944521 ~ 3959823 (+) |
| CI01000028_04441930_04444388 | TTC36 | coding | downstream | 124589 | 4441866 ~ 4444480 (+) |
| CI01000028_04729544_04888382 | CNTN5 | coding | downstream | 412267 | 4729544 ~ 4888382 (+) |
| CI01000028_05039088_05063207 | NA | coding | downstream | 721811 | 5039088 ~ 5063207 (+) |
| CI01000028_05114584_05116494 | RNF7, RBX2 | coding | downstream | 796241 | 5113518 ~ 5117062 (+) |
| CI01000028_05120588_05127452 | GRK7B | coding | downstream | 802906 | 5120183 ~ 5129029 (+) |
| G146931 | NA | non-coding | upstream | 46035 | 4270476 ~ 4270740 (+) |
| G146927 | NA | non-coding | upstream | 59123 | 4257180 ~ 4257652 (+) |
| G146864 | NA | non-coding | upstream | 190442 | 4126002 ~ 4126333 (+) |
| G147343 | NA | non-coding | downstream | 46935 | 4364212 ~ 4364594 (+) |
| G147350 | NA | non-coding | downstream | 74311 | 4391588 ~ 4391916 (+) |
| G147356 | NA | non-coding | downstream | 88094 | 4405371 ~ 4405695 (+) |
| G147359 | NA | non-coding | downstream | 94871 | 4412148 ~ 4412350 (+) |
| G147363 | NA | non-coding | downstream | 120777 | 4438054 ~ 4438299 (+) |
| G145843 | NA | other | upstream | 1292555 | 3023146 ~ 3024220 (+) |
| CI01000028_00525538_00533862 | NA | other | upstream | 3794844 | 524647 ~ 535245 (+) |
| G147462 | NA | other | downstream | 641426 | 4958703 ~ 4989838 (+) |
| G147636 | NA | other | downstream | 898813 | 5216090 ~ 5216611 (+) |
| G147693 | NA | other | downstream | 1123177 | 5440454 ~ 5453610 (+) |
| CI01000028_07470324_07471346 | NA | other | downstream | 3152615 | 7469543 ~ 7471432 (+) |
| CI01000028_08302370_08504940 | SPON1, SPON1A | other | downstream | 3984970 | 8302247 ~ 8504940 (+) |
