CI01000029_04099307_04107542 (LIN9)


Basic Information

Item Value
gene id CI01000029_04099307_04107542
gene name LIN9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4099307 ~ 4107547 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_04099307_04107542.mRNA
ATGGCGGAGCTCGAGCAGCTGTTAGACGAGAGCTCTTCAGCTAAAGCTCTTGTAAGTTTAAGAGAAGGAAGTTTGTCTAATACTCTAAATGAGAAGAACAATTTACCAAAATCACAGACCACCAGGGGACGGAGCAGTTACGTTTCTGTGGAAACGCCAACAAGGAGCTCAAAGAGGAGTCGACTGTCATGTGAGGATGAGGAGCGGCCTCTTGCCTCCAGATCTCCCAGAAGGAGTCAGAGGGTCACCACTGTGCCTCAGAAACTTGCAAACGTCACAACACCAGACAAAAGGGCTTCACAGAAAATTGGACTGAGACTAAGAAACTTGCTCAAACTGCCCAAAGCGCACAAATGGTGCATATATGAATGGTTCTATTCAAATATTGACAGGCCTTTATTTGAAGGAGACAATGACTTCTGCCTGTGTTTGAAGGAGTCTTTTCCCAATCTAAAGACCAGAAAGTTGACCAGAGTTGAATGGGGAACAATCAGAAGACTAATGGGGAAACCTCGAAGATGTTCCTCAGCATTCTTCGCTGAAGAACGAATGGCTCTGAAACAGAAGAGGCAGAAGATGCGTCTCTTGCAGCAGAGGAAAATCACAGATATGTCTTTATGCAAAGACTTGCCAGATGAGATTCCTTTGCCCTTGGTTATCGGCACTAAAGTTACAGCTCGTCTTAGGGGTGTCCATGATGGCCTGTTTACTGGTCAGATTGATGCAGTGGATACTAGTGCAGCAACATATCGCGTGACCTTTGACAGAAATGGGCTCGGCACACACACTGTTCCTGACTACGAAGTGCTTAGTAATGAACCTCATGAGACGATGCCCATATCTGCTTTTGCTCAGAAACAGCGGCCACCTCGTTTCCAGAACTTTCTGACCCCACCCCGTGGATCCTATCCAGGCTCAACCCAGTCCATTTTAATGGATAACGACCCGCTGTTTAGTCAGTCTCCCTGGAGAAGTAAACTGACAGGAACTGATGGAGAGACACTGGGTGGATTTCCTGTCAAGTTTCTTGTGCAAGTGACACGCCTGTCCAAAATCCTCATGATTAAAAAGGAACATATAAAGCATTTGAAGGAGATGAACACAGAAGCTGAGAAACTGATTGTACGCCAAGTAACTTTTTCCATTCTTCCGCTGCAGAAGTCCTATTCCATGCCGATTGGGTTGGACTTGCAGAAGAGATATGCCACAACAGTGCTGGACCTGGAACAGCTTAATAAAGACCTCAACAAAGTCCTCCATGAAGTACAGCAGTTTTGCTATGAGCTGGCCCCAGATCAGGGCATGCAGCCTGCAGATCAGCCCAGTGAGCTGCGACGGCGCTGTGAAGAAGAGTCACAGGACGTTGTGCGTCTGAGTAACGCGTTGCCTGATGGAGAACAGCGCGTCCAGAGCCCCGGCCTCACTCAGCTTGTCTCTCGTCTCACGGCACTCCTCCTGCAGATTAGGTGTTTGGCCGAAGGGGGAGACTTGAACTCGTTTGAATTCAAATCACTCACAGACTCTCTTAATGACATAAAGAGTTCAATAGATGACTCCAACCTCAGTTGTTTTCAGGATAATGTGGAGATCCATGTAGCACACATACAAAGTGGTCTGAGCCAGCTGGGTAACCTCCATGCTTTCTCTGCCAACAACACCAACAGAACGTGACTGAA

Function

symbol description
lin9 Predicted to enable DNA binding activity. Acts upstream of or within regulation of cell cycle. Predicted to be located in nucleus. Predicted to be part of transcription repressor complex. Predicted to be active in nucleoplasm. Is expressed in head and optic tectum. Orthologous to human LIN9 (lin-9 DREAM MuvB core complex component).

GO:

id name namespace
GO:0007049 cell cycle biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_04099307_04107542.mRNA True 1676 mRNA 0.47 15 4099307 4107547

Neighbor

gene id symbol gene type direction distance location
CI01000029_04076167_04079831 NA coding upstream 19343 4075796 ~ 4079964 (+)
CI01000029_04060211_04069639 NA coding upstream 28847 4058738 ~ 4070460 (+)
CI01000029_04007545_04011744 NA coding upstream 87299 4007545 ~ 4012008 (+)
CI01000029_03976118_03980629 SNX9, SNX9B coding upstream 118507 3976118 ~ 3980800 (+)
CI01000029_03855238_03922931 MLLT4, AFDN coding upstream 176187 3855238 ~ 3923120 (+)
CI01000029_04143243_04143794 NA coding downstream 35696 4143243 ~ 4144051 (+)
CI01000029_04213048_04215977 NA coding downstream 105501 4213048 ~ 4216310 (+)
CI01000029_04223968_04232159 CLIC4, CLIC5, CLIC5B coding downstream 115997 4223544 ~ 4232309 (+)
CI01000029_04253844_04257502 NA coding downstream 146179 4253726 ~ 4257678 (+)
CI01000029_04389599_04399047 OPN8A coding downstream 282052 4389599 ~ 4399065 (+)
G153589 NA non-coding upstream 25673 4073193 ~ 4073634 (+)
G153568 NA non-coding upstream 86309 4012687 ~ 4012998 (+)
G153562 NA non-coding upstream 96178 4002925 ~ 4003129 (+)
G153561 NA non-coding upstream 96746 4002324 ~ 4002561 (+)
G153555 NA non-coding upstream 104931 3992553 ~ 3994376 (+)
G153598 NA non-coding downstream 10984 4118531 ~ 4118925 (+)
G153600 NA non-coding downstream 12338 4119885 ~ 4120221 (+)
G153602 NA non-coding downstream 17212 4124759 ~ 4135507 (+)
G153605 NA non-coding downstream 34357 4141904 ~ 4142121 (+)
G153645 NA non-coding downstream 151771 4259318 ~ 4259607 (+)
G153475 NA other upstream 537303 3545125 ~ 3562004 (+)
G152451 NA other upstream 1336368 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2571408 1526754 ~ 1527899 (+)
G151495 NA other upstream 3727385 366541 ~ 371922 (+)
G151415 NA other upstream 3874062 170521 ~ 225245 (+)
G153790 NA other downstream 626042 4733589 ~ 4740107 (+)
G154587 NA other downstream 1163473 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 1349694 5461497 ~ 5470346 (+)
G155079 NA other downstream 2175138 6282685 ~ 6288398 (+)
G155083 NA other downstream 2323988 6431535 ~ 6490294 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 misc NC_035899.1 CM008302.1 55432081 ~ 55444669 (-)