CI01000029_06015438_06024591 (HADHA, HADHAA)


Basic Information

Item Value
gene id CI01000029_06015438_06024591
gene name HADHA, HADHAA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6015438 ~ 6025083 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_06015438_06024591.mRNA
ATGGCGAGCGCGAGACTGCTGTTGGCGCGGGGCTGCTGTACAGCCGTGAAAACTGTCACAGCTCGCACTCATGTCAGTTATGAAGTCAAGGATAATGTTGCTGTGGTACGAATCAATGATCCAAACTCAAAGGTGAATACTCTGTCCAAGCAGATGCAGGCAGAGATGGCGGAGGTGATGAATGAGATTTGGGGGAATTCAGCAGTGAAGAGCGCCGTCCTCATATCCAGAAAACCAGGATGCTTCATCGCCGGAGCCGACATCAATATGATTCAGGCCTGCAGCACAGCAGAGGAAGTGACATCACTGTCACAGGAAGGACAGAAGATGTTTGACCAGATTGAGAAATCCCCCATCCCTATTGTGGCTGCTATTAACGGCTCCTGTCTGGGCGGCGGATTGGAGTTTGCCATTGCATGTCAGTACCGCCTGGCCACTAAGAGTAAGAAGACGATTCTGGGCACCCCAGAGGTGATGCTGGGACTGCTGCCCGGGGCTGGAGGGACTCAGAGGCTGCCCAAAATGGTCGGCCTTCCCGCTGCATTTGATATGATGTTGACCGGCAGGAACATAAAGTCAGATAAAGCCAAAAAAATGGGGCTCGTACATCAGCTGGTGGATCCTCTGGGTCCAGGACTGAAGAGTCCAGAAGAGAGGACCATCGAGTATCTGGAGGAAGTGGCTGTTGATTTTGCTAAAGGTCTCGCTGGTAAAAAAGTCACTGTGGAAAAGAAGAAAGGACTCATGCAGAAGGTGCAGGATTTTGTAATGGGTCTGCCGCCGGTCAGGAAACAGATCTACAAAACTGTCCACAATAAAGTCATGAAACAGAGTAAAGGGCTTTATCCTGCGCCGCTGAAGATTATAGAGTGTGTTCAGACGGGCATTGAAAAAGGAAACGCTGCTGGATATCAGGCTGAATCTCAGAACTTCGGCAAGCTGGCGATGACATCAGAGTCCAGAGCTCTGATTGGCCTGTATCATGGTCAGGTGGCCTGCAAAAAGAACCACTTTGGGCGCCCAGAGAGAGACGTGAAAAAGCTTGCTGTCTTGGGGGCAGGGCTTATGGGAGCAGGTATCGCCCAGGTAACAGTAGACAAGGGTGTGGCGACCATCTTAAAGGACACAACACAGGAAGGACTTGCCAGAGGACAGCTGGACTACCATGGTTTTGAGAATGTGGATATGGTCATTGAAGCCGTGTTTGAAGACCTGTCGATCAAACATAAAGTGGTGAAAGAGGTTGAGGCCGTGATTCCTCCTCACTGTATCTTTGCCACCAACACATCCGCTCTGCCGATCAAAGACATCGCAGCAGCCAGCAGGAGACCTGAAAAGGTGATCGGGATGCACTATTTCTCTCCGGTGGATAAAATGCAGCTGCTGGAAATCATCACCACAGATAAAACCTCCAAAGACACAACAGCTTCTGCCGTGGCCGTGGGGCTTAAACAGGGGAAGGTCATCATAGTGGTGGGGGATGGTCCAGGGTTTTACACCACTCGTTGTCTGGCGCCCATGTTAGCCGAGGCCGTTCGTGCGCTGCAGGAAGGAGTTGGGCCCAAGAAATTGGATTCCCTGACAACAGGATTTGGGTTTCCTGTTGGCGCGGCGACACTTGCTGACGAGGTCGGTATTGACGTGGCGGCTCATGTTGCAGAGGATCTTGGCAAGGCTTTTGGAACACGATTCGGAGGAGGAAATGTTGAGGTCTTGAAGATGATGGTCCAAAAGGGGTTCAAAGGGCGCAAGTCTGGAAAGGGTTGTTACGTGTACGAAGCCAAGTCGAAAGAAAAGAAGGTGAACTCAGGAGCCGAAGAGATTCTTAAGAGCTTCAAGCTAACAGCGCCCCCTGCTGTCTCCTCCGATGAGGATATTCAGTACAGACTCGTGTCTCGATTTGTGAACGAGGCCGTACTGTGTCTACAGGAAGGCATTCTGCCCGACCCCATGCAGGGAGATATCGGAGCCGTGTTTGGGCTTGGCTTCCCGCCTTGCTTGGGAGGCCCGTTCCGTTTTGTGGATTCATACGGAGCAGACAAACTTGTCCAGAAAATGAAGCGCTTTGAAGAGATTTATGGTAACCAGTTCACCCCCTGCCAGCTGCTCATCGACCACGCCAAGAACTCCAGCAAGAGATTTCACAAGTGAAAATTCACCACCGTTATAATTTTTTTGATCTCAGTATTTGGCATCTTATAAAAAAAAAAAAAAAAAAGTTACATTCACTTACTTAAAATGGTGCATCATTTACAAATCCTTTATTTGTGTTTTATCATTTGTGGTTTAAAAAGCAGCACTTTCCTAACTTGGCCTGTACATAATTTATCAGTTTGTTTATGTGATCAGAAAAACGTTAATGATATAAAAGTTGAGATTTGTTCTCAACACCAAGATAAACTTCTTTTTTTTTTTAACAGATAAAGAATTTTCTGAATAATATTCATTCAGGTACACATAACATCACTACAAAGCACTGTAAAAACATTTATGAATGTTGCAGCTAAATTTTTTTTTTTTTTTAACCAAGGTGCCTCAGATTATCTCCAGGTAGAGCTGGAGAGGGACTATTGCACAGTTATTATTTGTTGTATTTTTTTGTATAGCATAGTAGTTTGTATGTTTGCATATGATTCTGCTACA

Function

symbol description
hadhaa Predicted to enable enoyl-CoA hydratase activity and long-chain-3-hydroxyacyl-CoA dehydrogenase activity. Acts upstream of or within response to bacterium. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial fatty acid beta-oxidation multienzyme complex. Is expressed in several structures, including cardiovascular system; midbrain; midbrain neural tube; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in fatty liver disease and mitochondrial trifunctional protein deficiency. Orthologous to human HADHA (hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha).
hadha Predicted to enable enoyl-CoA hydratase activity and long-chain-3-hydroxyacyl-CoA dehydrogenase activity. Involved in cardiolipin acyl-chain remodeling. Located in mitochondrial nucleoid. Implicated in fatty liver disease and mitochondrial trifunctional protein deficiency. Biomarker of Alzheimer's disease.

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process

KEGG:

id description
K07515 HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_06015438_06024591.mRNA True 2643 mRNA 0.47 19 6015438 6025083

Neighbor

gene id symbol gene type direction distance location
CI01000029_05772821_05785145 NA coding upstream 230066 5772821 ~ 5785381 (+)
CI01000029_05695252_05699826 NA coding upstream 315560 5693165 ~ 5699878 (+)
CI01000029_05591971_05597708 NA coding upstream 417596 5591971 ~ 5597842 (+)
CI01000029_05578983_05588654 NA coding upstream 425731 5578632 ~ 5589707 (+)
CI01000029_05577218_05577697 NA coding upstream 436901 5577218 ~ 5578537 (+)
CI01000029_06066859_06073942 NA coding downstream 41776 6066859 ~ 6073974 (+)
CI01000029_06076254_06083211 XKR5 coding downstream 51038 6076121 ~ 6084211 (+)
CI01000029_06086495_06092753 NA coding downstream 61412 6086495 ~ 6093859 (+)
CI01000029_06214396_06222690 NA coding downstream 187795 6212878 ~ 6222735 (+)
CI01000029_06294088_06295613 NA coding downstream 267936 6293019 ~ 6296026 (+)
G154980 NA non-coding upstream 12093 6003144 ~ 6003345 (+)
G154978 NA non-coding upstream 13742 6001412 ~ 6001696 (+)
G154975 NA non-coding upstream 16304 5998904 ~ 5999134 (+)
G154974 NA non-coding upstream 16980 5998089 ~ 5998458 (+)
G154958 NA non-coding upstream 39653 5975512 ~ 5975785 (+)
G154996 NA non-coding downstream 54532 6079615 ~ 6094178 (+)
G154997 NA non-coding downstream 74679 6099762 ~ 6100189 (+)
G155032 NA non-coding downstream 137568 6162651 ~ 6163392 (+)
G155041 NA non-coding downstream 138597 6163680 ~ 6163917 (+)
G155060 NA non-coding downstream 220600 6245683 ~ 6245975 (+)
CI01000029_05461497_05468985 BATF other upstream 545092 5461497 ~ 5470346 (+)
G154587 NA other upstream 743903 5271020 ~ 5271535 (+)
G153790 NA other upstream 1275331 4733589 ~ 4740107 (+)
G153475 NA other upstream 2453434 3545125 ~ 3562004 (+)
G152451 NA other upstream 3252499 2761594 ~ 2762939 (+)
G155079 NA other downstream 257602 6282685 ~ 6288398 (+)
G155083 NA other downstream 406452 6431535 ~ 6490294 (+)
CI01000029_06906861_06907157 NA other downstream 881105 6905834 ~ 6908633 (+)
G155522 NA other downstream 1609750 7634833 ~ 7637834 (+)
G155627 NA other downstream 1906397 7931480 ~ 7932177 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017670 hadhaa coding NC_007131.7 CM002904.2 47953047 ~ 47984895 (+)