CI01000029_06066859_06073942


Basic Information

Item Value
gene id CI01000029_06066859_06073942
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6066859 ~ 6073974 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_06066859_06073942.mRNA
AAGGAGCTGGGTGTTTTCACCACAGAGCTCATTCCTGTAGGGACCCGGTTCGGCCCGCTGCAGGGAGAACCTCTCCACCCTGAAGATATATCTGCAAACATCAGCCGGAAACACATCTGGATGATCTTCTCGGAGGGGCGATTACATCACTTCCTGTCTTGTGAGCATGAGAGCGACTGCGGTTGGATGTGCTTTGTAAATTCTGCCCCATCTCCGTGGCAACAGAATCTTGCAGGATTCCAAATTGGAATGCAGGTTTATTTCTATGCAATGAAGGATCTAATGCCGGGGGAGAAGCTACTGGTGGGGCGGAGCCTAGAATACAAGCGGCCAATGAGCACCTTTCTGAAACAGCCACCTCCCCCACACCCTAATTCTCAAGATAAAGATCAGGTGAGGAGTAGAAAGAGAGGTTATACTGTCACTGAGATCCTGGATCTGAATCCTGGGACTGATCATCACACTGTAACTCCACTTAGCACCATCACACCATCTAAATATGGGGAAAAAGTGACCAGAGACCTGCAGAATCCAAAATTACCTCCATCTTTGATGACTAATAACTTCTCTGACATTCCTTTAAACGTAGGAGGACATGTATACACCCCTGCTATTCCACAGTCCTTTATGCCAAGGTATATATGGCCTATTATTCAGTACGTGCCTTCACATCAGCCAATAAGATTTGGCCGAACAGCAGCACACATGTCCCATAATATTCCCATTCCACCAATCCACATGTATCCATCACTTTTGAGTCAAACATCCAAAGAGAATCACCTTTCATTAGCGTTGACCAATAAAGACGACCTCAAAATTGATGTGAGAGACTCTACAATAAGAGAGACAAAACCTAAAGACTTAACAAATATGTCACGTAACCCACCGCCAACCCTCAGCAATGCAACCGATCCCTCTCCTGCTGAAGTATCCAGTGCTGATGACATCACAGCCAATAGAGACTCACCTGAGATGGGTGTGGCTTCCCCAGGTTGCTCCTCCTCTGACAGACACAGCACAGAGTCTCAGGGCGCCCAGAAGCGACAGACTGTAGGTTACAAGGCTTTACCGTATCCATTGCAGAGACAGAATGGAAAGATCCAGTATGAATGTAACGTTTGCGGGAAGAACTTCAGTCAGCTGTCAAACCTGAAGGTGTGTAACAGGCGTTTCAGCAGCTGCAGCAACCTGAAGACTCACCTGCGGCTGCACTCAGGTGAACGGCCGTACGTCTGTAAGCAATGCCCCGCCAGCTTCACCCAGCACATCCACCTGCGGCTCCACAGACGCCTGCACAACGCTTCACACTCACACCAGTGCCCGCAATGCCCTCGCAGGTACACACACCTGTGCAGCCTACAGATCCACATCCACCAGTTCTGTCCTGCCACCAGCGTCACAGGCTCCGCCTCTCAGCTGGACTTAGCCAATGACGCGCTCGAGAGGTTTGATCTCGGCGAAGGTGCAGAAAGCCTTGAGGTTAATATGGAGACGGAGTCCATAAAAAGGATGTGCCAGGTGATCTGGACACAGGTACTTGCAGATCCACCTGTCCTCCGGAAGCAGGAAGCAGCACAGGTCCAAATAATAAAGAAATGAATCGTCCAGGCCTCTTTCTCAAAAGGTTTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_06066859_06073942.mRNA True 1631 mRNA 0.49 4 6066859 6073974

Neighbor

gene id symbol gene type direction distance location
CI01000029_06015438_06024591 HADHA, HADHAA coding upstream 41776 6015438 ~ 6025083 (+)
CI01000029_05772821_05785145 NA coding upstream 281487 5772821 ~ 5785381 (+)
CI01000029_05695252_05699826 NA coding upstream 366981 5693165 ~ 5699878 (+)
CI01000029_05591971_05597708 NA coding upstream 469017 5591971 ~ 5597842 (+)
CI01000029_05578983_05588654 NA coding upstream 477152 5578632 ~ 5589707 (+)
CI01000029_06076254_06083211 XKR5 coding downstream 2147 6076121 ~ 6084211 (+)
CI01000029_06086495_06092753 NA coding downstream 12521 6086495 ~ 6093859 (+)
CI01000029_06214396_06222690 NA coding downstream 138904 6212878 ~ 6222735 (+)
CI01000029_06294088_06295613 NA coding downstream 219045 6293019 ~ 6296026 (+)
CI01000029_06305668_06307332 NKX2.4B coding downstream 231271 6305245 ~ 6307675 (+)
G154980 NA non-coding upstream 63514 6003144 ~ 6003345 (+)
G154978 NA non-coding upstream 65163 6001412 ~ 6001696 (+)
G154975 NA non-coding upstream 67725 5998904 ~ 5999134 (+)
G154974 NA non-coding upstream 68401 5998089 ~ 5998458 (+)
G154958 NA non-coding upstream 91074 5975512 ~ 5975785 (+)
G154996 NA non-coding downstream 5641 6079615 ~ 6094178 (+)
G154997 NA non-coding downstream 25788 6099762 ~ 6100189 (+)
G155032 NA non-coding downstream 88677 6162651 ~ 6163392 (+)
G155041 NA non-coding downstream 89706 6163680 ~ 6163917 (+)
G155060 NA non-coding downstream 171709 6245683 ~ 6245975 (+)
CI01000029_05461497_05468985 BATF other upstream 596513 5461497 ~ 5470346 (+)
G154587 NA other upstream 795324 5271020 ~ 5271535 (+)
G153790 NA other upstream 1326752 4733589 ~ 4740107 (+)
G153475 NA other upstream 2504855 3545125 ~ 3562004 (+)
G152451 NA other upstream 3303920 2761594 ~ 2762939 (+)
G155079 NA other downstream 208711 6282685 ~ 6288398 (+)
G155083 NA other downstream 357561 6431535 ~ 6490294 (+)
CI01000029_06906861_06907157 NA other downstream 832214 6905834 ~ 6908633 (+)
G155522 NA other downstream 1560859 7634833 ~ 7637834 (+)
G155627 NA other downstream 1857506 7931480 ~ 7932177 (+)

Expression


Co-expression Network