CI01000029_06406402_06408397 (INSM1A)


Basic Information

Item Value
gene id CI01000029_06406402_06408397
gene name INSM1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6406069 ~ 6408397 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_06406402_06408397.mRNA
ATGCCCAGAGGATTTTTAGTCAAAAGAAATAAGAAAGCGACACCTGTTTCCTACCGCGTCCGCTCGGAGGAGGATGAGCAGGGCGCGTTTCCAGCCGCGCAGCAGGACGCACTGTGCGCGCGCCGCCCGGTTTCGCCTGTGCAGTTCGGGAACCCCGAAACAGTCTACCGATCCATGTACAGCCCGACCCGACCCGTGAGCAGAGAGCACGAGAGGGCGTGTTTGGAGAGGCGCTTCAATCTCGGCTCGCCTATTTCAGCGGAGTCCTTCCCGGCTGCGCCCAACGGCTCCGATCACGCGCCGTTCGCGCCCGTGGATCTTAAAATCGGCACCAGCAACAGCAACCGAACCGGCACCACAGTAGCCACCAAAAGACCCGCATCAGACGCGGAGCGCAAAGGCAAACCCGCGTCCAAGAAAGCCAAAGCCATGCGGAAATTGCAGTTCGAGGACGAGATGACCACTTCTCCGGTGCTGGGCTTGAAGATCAAAGAAGGTCCGGTGGAGCAGAAGCCCAGATCTCAGTGCACAGGCGGCGACAAGCCGCTCGGCGAGTTCGTGTGCCAGCTGTGCAGAGAGGCGTACGCCGATCCCTTCTCCCTAGCCCAACACAAGTGCTCCAGGATCGTCCGGATCGAGTACAGGTGCCCCGAATGCGACAAGCTCTTCAGCTGCCCGGCGAACCTGGCCTCGCACCGGCGGTGGCACAAACCCAAACCGCAGAACCCGGAAAGCAATAAGACCCCCGCGCCCGAGAAAGACGAGACTTCCAGCGACAGGGACACTCCTAGTCCTGGACTTTCCGAATCTGGCTCGGAAGACGGCCTGTATGATTGCCAGCACTGTGGGAAGAAGTTCAAACGTCAAGCGTACCTGAAAAAGCACGTGACGGCGCATCACGAAGCGTGCGATAAAACCCAAAGCCAAGCGCCTCTGAATCTCAGCGCCTCCGAGTGCCACCTGTGCCCGGTGTGCGGAGAAAACTTCCCGAGCAGAATGAGCCAGGAGAGGCACATCCGTCTGCAGCACTCGGCGCAGGTTTACCCGTGCAAATACTGTCCCGCCATGTTTTACAGCTCACCGGGACTCACGAGACACATCAACAAATGCCACCCGTCGGAAAACAGGCAGGTCATCCTGCTTCAGATGCCGCCAAATGTTTCGTTTATTGATCTAAAGATCAGTTTCTTCGTCTGCTGAAAGTCTGAAATTCACCTTGCATTAGATACAATCGTTTATTAATTTATTTTTTTATGTTTTACGTGTTCAGCGCTTGTGTGTTTCTGCAGTTGCTATTTGTCCAAAAATGCTTAAAATAATAATAATAATAATAAACAGTCCAAAAAGTCAAAATGGGATCCACTTTTGATGCGACATTCCAGCAATCTGAAGACCAGAGATGTGCGTGTTGTCGTGTGGAAACCCAGACACTGTGAACACATAGAAATACATCATCATCATCGTCATCATCATCTTATACAATGAAATGTGTCCAACTGGATTCTGTACCAAGATACGTCTGCACTTAATAAA

Function

symbol description
insm1a Enables DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including sensory epithelium regeneration; sensory system development; and spinal cord motor neuron differentiation. Predicted to be part of transcription repressor complex. Predicted to be active in nucleus. Is expressed in several structures, including nervous system; optic cup; pancreas primordium; presumptive telencephalon; and trigeminal placode. Orthologous to human INSM1 (INSM transcriptional repressor 1).

GO:

id name namespace
GO:0043697 cell dedifferentiation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_06406402_06408397.mRNA True 1533 mRNA 0.53 2 6406069 6408397

Neighbor

gene id symbol gene type direction distance location
CI01000029_06320111_06340400 XRN2 coding downstream 65669 6320105 ~ 6340400 (-)
CI01000029_06283570_06287370 PAX1B coding downstream 117802 6283379 ~ 6288267 (-)
CI01000029_06238355_06240993 NA coding downstream 165076 6238184 ~ 6240993 (-)
CI01000029_06166033_06201616 IPO13 coding downstream 204453 6165961 ~ 6201616 (-)
CI01000029_06114050_06116816 NA coding downstream 289253 6113964 ~ 6116816 (-)
CI01000029_06410464_06420256 CFAP61 coding upstream 1625 6410022 ~ 6420256 (-)
CI01000029_06431763_06439215 NA coding upstream 23323 6431720 ~ 6439215 (-)
CI01000029_06449255_06451786 NAA20.S, NAA20, RIN2 coding upstream 40715 6449112 ~ 6451786 (-)
CI01000029_06486658_06492567 NA coding upstream 78073 6486470 ~ 6492567 (-)
CI01000029_06606850_06665941 NA coding upstream 198453 6606850 ~ 6666150 (-)
G156285 NA non-coding downstream 21060 6384761 ~ 6385009 (-)
G156266 NA non-coding downstream 135949 6269919 ~ 6270120 (-)
G156249 NA non-coding downstream 328437 6076162 ~ 6077632 (-)
G156222 NA non-coding downstream 435854 5969997 ~ 5970215 (-)
G156219 NA non-coding downstream 448873 5956866 ~ 5957196 (-)
G156345 NA non-coding upstream 130126 6538523 ~ 6539321 (-)
G156357 NA non-coding upstream 167330 6575727 ~ 6575986 (-)
G156358 NA non-coding upstream 169504 6577901 ~ 6578184 (-)
G156359 NA non-coding upstream 169864 6578261 ~ 6578493 (-)
G156362 NA non-coding upstream 188092 6596489 ~ 6596700 (-)
G154415 NA other downstream 1418644 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 1928857 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 2698817 3698572 ~ 3707883 (-)
G153891 NA other downstream 3119515 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 3813267 2587549 ~ 2592379 (-)
G156542 NA other upstream 761970 7170367 ~ 7170951 (-)
G156495 NA other upstream 957930 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location