CI01000029_06410464_06420256 (CFAP61)


Basic Information

Item Value
gene id CI01000029_06410464_06420256
gene name CFAP61
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6410022 ~ 6420256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_06410464_06420256.mRNA
TCCTCATCTTCGATTCAACAATCTCACTCTCATCTCCACTCATGGGCTTCCAGATCGCTGCTCTGATGATAACATGAGATTTCTGGCTACAAGTCACTGCTTCAGCGATCAGGATCAAGCCCAGCTGTCTTTGCGCTCCTGGATCAGTGTGGTGACGGGTAAGATGAAGGCCATCAACCGCGAGGTCAAACACGTGGAGCTGATGGCGAATGGTAAAGTGAACTATGACTATCTGATCCTCTGCACCGGCCTGCAGTATCAGATGCCCAGTCTCACCAGTATGGACGTCATTAACCAGACCACCAGCAATCTACATCAGGCCAGACACAGATCCACATGGCCCGTTTCATCCAACCTCTTCACCCTCAATGACCAGCATGACTGCTCAAACGTCCATCAGTGGCTCATGGACAACTTCGTGGAACTGACAGGCGATGCTGTGGTATATGGAAACACCATAGACGTGTACACCTGTGTGGAGACGCTTATGCGTCTTGGTGTCTGCGGCTGCCGGATTCATGTAGTACATCCTCCCAAAGATGACCCATCTTCCTGTTTCCATGATGGCTCGGTGGATCACGCAGTGAAACAGGCTCTGGAAAAGGAGGAAGTCCAAATCCATCATGACTGCCTTTTGAAGCAACTCAATGATGGACAACACACAGATCCGGTGACATCGGTGTCCTTCACCACTGACGGTCCGACCCTACGACTGGAGTGTGCGGTGTTCTTCAGCTTCTCTTGTAAAACCGTCGACTGCGACGCCTTCAAGGCCATCAATGATGCCTGTTTAGTGTTCGATGGCCGTTTGGTGGTAGATACCACCTTCCATACCAACGACCCCTCCATATACGCCGCTGGCCCTTTGACCAAATACTCCCGCCGTTACCATGCTGACCAGTGGAGCGATTCCTGCTTTAATTCTAAGGAGGTGGGGCAGAGTTTGGCATCTGTTCTCTTGCCCTTATGTGACCCGACCCTGGAGCGTCCCGCCGGCCCACCGTCTGACCAGGAGCACCTCATTCCACTCTACAGTCAGGCCAAGATCCAAGGTCACTATTCTCCTTCCGAATTTCTGAATCACAAGGCCAGTACATCAGTGCAGGGTCGTGACATGGTGACGGGCCGCACTGAAACGGGGAACTACTTTCATCTGCATCTCAGCCAGCATGATGTGGTGGAGAGCATCACGTGCCTCTCGAAGAATGCACTTCCCGTCTCCAACCTCCTGCGTCTCTACAGGAAACACCAGCTGCTGCTGAATCATCTCTGCTCACGCTACCATGAGGGTTTGGTCCATGACATGTACAGTTATTTTAGAGAGAATTGGTGCTTGGCTCTTTATCACGACCGCTTTGCTGACTTTGAACAGGAGGTGCGCCAAATCATGGACTCGGCCAAACTAGAGGGTGAGAGTGGTTCGGTGTCAATTCAAGAGGCTCTTCAGAAGATAGTGGACGATAAAGCAGAGTCCGATCAGCCGACGAGTCTCAGCGAGGTGTTTCAGAAAAGCGAGGCTTATTCTGCTCTGAGAAAGAGTGTTCTGGATTATCTGAAGTACAACAGATACCATCTGACTATGTACGCCCGGCCGGGACTGCTGTAATCAATATCCATTTACATTTAGGAGCATTTATTCACTACTTCATCTTTTGTTTCTTTATTTCTTTACATTTGCTGCACCATATGTCACATTGTGGGGGGTGGGGGCCAAAGAACTTGAGCAAATAATTACAGCTTCTTGTTTTGTCAAATGCAAATGTTTGGTGTGTACTGAGTGACAATTCATTAACAATATCTGACTTTGCTCTTTCGAATAGTCTGTGTATGTGTTATCCAGTATTGGGTTGTATATTATGCTGAGATCTGAAGGCAGTGCGGCGGGGCAGATAAGAGCAGCAGAACGAGGGTGAAGACGGAGCGCAGCAGCAGCTGTATGATAATGAATGTGGGGCAGAAAATCACAGACGCATGATCCAACAGTCACACGTCGTACAGCTCATGTATGGGTAGATCAGATGTTAAACATAACAACAAATGAAAATAAA

Function

symbol description
cfap61 Orthologous to human CFAP61 (cilia and flagella associated protein 61).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_06410464_06420256.mRNA True 2048 mRNA 0.49 8 6410022 6420256

Neighbor

gene id symbol gene type direction distance location
CI01000029_06406402_06408397 INSM1A coding downstream 1625 6406069 ~ 6408397 (-)
CI01000029_06320111_06340400 XRN2 coding downstream 69622 6320105 ~ 6340400 (-)
CI01000029_06283570_06287370 PAX1B coding downstream 121755 6283379 ~ 6288267 (-)
CI01000029_06238355_06240993 NA coding downstream 169029 6238184 ~ 6240993 (-)
CI01000029_06166033_06201616 IPO13 coding downstream 208406 6165961 ~ 6201616 (-)
CI01000029_06431763_06439215 NA coding upstream 11464 6431720 ~ 6439215 (-)
CI01000029_06449255_06451786 NAA20.S, NAA20, RIN2 coding upstream 28856 6449112 ~ 6451786 (-)
CI01000029_06486658_06492567 NA coding upstream 66214 6486470 ~ 6492567 (-)
CI01000029_06606850_06665941 NA coding upstream 186594 6606850 ~ 6666150 (-)
CI01000029_06666877_06679215 NA coding upstream 246574 6666830 ~ 6679215 (-)
G156285 NA non-coding downstream 25013 6384761 ~ 6385009 (-)
G156266 NA non-coding downstream 139902 6269919 ~ 6270120 (-)
G156249 NA non-coding downstream 332390 6076162 ~ 6077632 (-)
G156222 NA non-coding downstream 439807 5969997 ~ 5970215 (-)
G156219 NA non-coding downstream 452826 5956866 ~ 5957196 (-)
G156345 NA non-coding upstream 118267 6538523 ~ 6539321 (-)
G156357 NA non-coding upstream 155471 6575727 ~ 6575986 (-)
G156358 NA non-coding upstream 157645 6577901 ~ 6578184 (-)
G156359 NA non-coding upstream 158005 6578261 ~ 6578493 (-)
G156362 NA non-coding upstream 176233 6596489 ~ 6596700 (-)
G154415 NA other downstream 1422597 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 1932810 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 2702770 3698572 ~ 3707883 (-)
G153891 NA other downstream 3123468 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 3817220 2587549 ~ 2592379 (-)
G156542 NA other upstream 750111 7170367 ~ 7170951 (-)
G156495 NA other upstream 946071 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018432 si:zfos-223e1.2 coding NC_007131.7 CM002904.2 48488954 ~ 48516765 (-)