CI01000029_06606850_06665941


Basic Information

Item Value
gene id CI01000029_06606850_06665941
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6606850 ~ 6666150 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_06606850_06665941.mRNA
ATTCTGAAACAAGCTTTATCTTCAGTCCATCTTTACGTCGCTGAGAATGCCTGGAGATCATACTGTATATCTGATGGTACATCAGTCTTCCTGAGACAGTCATTCAATCATTTAAGTAAAAGAATTTCATTACATGTGATGTAAAATATTTGAAGGAGGTCACTTAGAAGAGACTGTCCTAAGTGTAGTTTCCATGAAGTTTAGCTACGATGACAAAATGCTTTTTGTGGTTGGTTTTGCAAGAATTGGGCTCACCGAGAGACTTGATAACCAGTGATGTGACCGACACCAGCTTCATGGCGTCGTGGACGCCCGCTCCAGGAAGGGTGAGGCAATATCGTGTTCGCTGGAGGTCTCTGTACTCTGAGGAGTCTGGGGAGAAGCTGGTGCCTGGGGATGTGACCAGCACACTGTTGGAGAACCTCACCCCTGAAACACGCTACCAGGTGTCTGTGTTCGCGTCGTATGGCAGCGGGGAAGGAGAACCACTTGTAGGAGAAGAGACCACTGATGCATCTGCATCTGGCAAGGCTTTAGTGGTGTTTGATGAAACTGAACGAACCATGCGTGTGACATGGAATGCTGCTCCAGGCCCTGTGGTCAGCTACAGGCTCACGTATGTCCCTCAGGCCGGCGGTAAAGAGATGACAATGAAGATCCCAGCCAACGTCACCACCACTATGCTGAGAAAACTGCAGCCCCTGACCACCTACCTCATCACCGTGCATCCCATTTACAAACGAGGAGAAGGAAAAGCAAGGCAAGGAGTAGGAACCACACTGTCACCATTTAAAGCCCCAAGAAACCTACAGACCTCTGAACCCACCAAAACCAGTTTCCGTGTGTCCTGGGACCATGCTCCCGGTAATGTACGAGGGTACAAAGTCACCTTCCATCCCAGCGGAAATGATATTGATCTAGGAGAACTTCTTGTTGGACCATACGACAACACAGTTGTTCTAGAGGAACTCAGAGCTGGAACTAAATACTCTGTGGCTGTTTTTGGCATGTTTGATGGAGGTGAAAGTATGCCGCTGGCCGGGGAGGAGAAGACCACTCTTTCTGATGCACCTAGCAATGAAACACCTATTGACTTATCCGATGCTCAGTGTAAAACCACAGCCAAGGCTGATATCGTCCTGCTGGTTGATGGATCCTGGAGTATTGGCCGTTTGAACTTCAAAACCATCCGGGCTTTTATTGGTCGCATGGTGGGCGTCTTTGACATCGGCCCTGACAGGGTTCAAATCGGCAAGTCTCCCCTGCCTCTGTTTACTTCATGTTTGGCTCAGTACAGCGGGGATCCCAAAACTGAGTGGCATTTGAATGCCCATGCCACCCGTGATTCACTGCTGGAGGCTGTGGCCAACTTACCCTACAAAGGCGGAAATACAATGACGGGTATGGCCTTGAACTACATCCTCCAGAACAACTTCAAACCAAATGTGGGTATGAGACCCGATTCTCGCAAGATTGGTGTCCTTGTTACTGATGGCAAATCTCAGGACGAGATTATAGTGAATTCTCAGAAACTGCGTGACTCTGGCATTGAGCTCTATGCCGTCGGTGTGAAGAATGCAGATGAAAATGAGCTGCGGGCCATTGCCTCCGACCCTGATGAAATTCACATGTACAATGTCAATGACTTCTCCTTCCTGTTGGACATTGTGGACGACCTCACTGTCAACCTCTGTAATAGTGTTAAAGGCCCAGACAGTGGCCCAGGGACACCCACTGACCTGGTGACTTCTGAGGTCACACACTACTCCTTCCGTGCTACCTGGATCCCACCTGACGAGCCAGTGGAGAAGTTTCGTATCGAGTACGTCCCTGCCGCTGGAGGAAACACTGAAATGATGTTCGTTGATGGTGAAGAAAACACAGTTGTCCTGGTCAACTTGACCCCCATGACCGAGTATGTTGTCAGAGTCTATGGAGTGATTGGTGAGGAGAGCAGTGAGCCTTTGAAAGGAACCGAAACCACATTGCCCCTACCTGCTGTTACCAGCATGACCGTGTATGACGAGGCCCAGACATCCATGCGGGTCAGATGGGAGCTAGTTGACGGGGCCAGTGGGTACTTGCTGAACTACAACACCATCAACGCCAGCGTGCCCTCTGGAAAGATGGAGATGCGAGTTGGTGCAGATGTGAATGATGTCCAGTTATTGCAGCTGGTTCCAAACACAGCGTACTCTATCTCCCTGTTCGCTCTACATGGAGTGGACACCAGCGAACCCCTGATCGACAGAGGAGTCACTCCGGGTGAGTTGAGAATCACAGAAGTGACTCACAGCTCCATGCGTCTAACTTGGGATGCAGCTCCTGGAAACGTCAAAAAGTACATCATCACCTACAAGCGAGAGGACGGAGAGCTGAAAGAGGTTGAGGTCAACGGTGACATCACCACCCTGGTTCTCACCAGCCTCCGCTCTCAGACGGAGTATGATGTTGCTGTCACTCCCACCTACGACGAGGGTCCAGGAAATAAGATGATTGGCAGTGCAATAACTGATGTGGTTCCTGCACCCAAGAACTTGAGGTTTTCTGAGGTGGGCCAGACTTCATTCAGGGCCACATGGGAGCATGGAGCACCAGACGTCGCTCTGTACCGCATTGGTTGGACCAAGAAGGGCGAGAACAACTTCAAATATGAGATCCTGAGTCGTGAAGAGACAAGCCAAGTTCTGACAGACTTAGACCCAGACACAATGTATGACGTCACTGTCACAGCCATCTACCCCGATGAGTCGGAGAGTGAGGATTTGATGGGGAGCCAACGCACATTGTCAAAGGTCATTACACCCGTGCCCACTGGACCACCACAAAACCTCCAGGTCTTCAACGCCACCACTACAACTCTAACCGTGAGATGGGACCACGCACCAGGCCCCGTCCAGAACTACAAAATCACCTACCAGCCCGTTGCGGGTGGAAAACTGCTGTCTGTTCAAGTTGGTGGAAAAAAGAACAGTGTCATTCTTCAGAAGCTGTCCCCTGACACCCCTTATTCCATCACTGTGGCTGCCGTCTATCGCACTGGAGAAAGTAAAGATATTTCCGGCCAAGGAAAAACAAAAGCCTTAGGAGGAGTGAGAAACCTGCAGGTTTTGAACCCCACCATGACCACGCTGAACGTTCGCTGGGAGCCAGCGGAAGGAAAAGTGAAGGAGTATAAAGTTGTCTACGCACCTGCAGCTGGTGGTGCCGAAAGCATGGTAGGACTGGAGCAGGTATCAGGAACCACTACCACCACAGTTCTGAGAGGCCTTCAGTCGGATACACTTTACACTGTGACCTTAATTCCGGTTTATGCAGAGGGAGATGGCCAAAGAATGTCTGAGAATGGAAAAACAAGGGCTTTGGGTGGTGTGAAAAACCTGAGGGTTACCGACCCAACCATGACCTCTCTGAACGTCAAATGGGACCCCGCAGACGGGGCCGTGCGCCAGTACAAGATCTTCTTCGTTCCTGCAGCTGGAGGAACTGAGGCGATGGAACAAGTACCTGGAGCTCAAACAACCATAGTTCTACGAAACCTGCAGCCTGATACTCCATACACTGTATCCGTGGTTCCAGTGTATCCCGCCACAGAGGGCAGACGCCAGTCTGAGAATGGAAGGACATTACCTCTTGGAGGTGTTCAAAATCTCCGTCTCATTGATCCCACCTTCACAACACTCACTGCCACATGGGAAGCTGCCGATGGGAATGTGCAGGGCTACAAAGTGTTATACGTGCCCACCAACGGAGGAACTGAGCTCATGGAACAAGTGTCTGAGAGCACCACAACATTAGTGTTAAGTAAACTCCTGCCAAACACAATGTACACAGTGACTGTTTTGCCAGTGTATGCTGAAGGAGATGGACCTCAACTCTTAGCGAAGGAAAAGACTAAACCTTTGGGCAGTGTGAGGAACCTGCAGGTAACAGATCCAACTATCAGCACCTTGAACGTACGCTGGGAGCCGGCAGAAGGCAATGTGCGGGAATACATTGTCATTTACGTTCCTGCCGGTAGCCAAGATCAAGAAGTGGATCAAGTCTCTGGAACCACCACCTCAACTGTTCTGAAGAACTTGCAGCCTGACACAACCTACACAGTGACTCTGGTGCCAGTATATCATGAGATGGAGGGCAAGCCTCTTTCAGAGAATGGAAGAACAAAACCACTGGGTGGAGTTCGCAACCTTCAAGTTACTGATCCCACCAGCAGCACCCTAAATGTGCGATGGGAGCATGCTGAGGGAAACCCTCGAAATTACAAGGTTTTCTATGTCCCACAGCCTGGAGACTCTGAGAAGATGGAACTAGTTTCCGGTGGCACGACAAGCACCGTACTGCGTAATCTCAATCCTAACACAGTGTACAAGGTCACATTGTTGCCTATGTATGAAAATGACGTGGAAGGAAAGCGTCAGTCAGAAAATGGAAAGACAAAACCTTTGGGAAATGTGAAGAACCTCCAGGTGACAGACCCAACTGTGAACTCTTTGAGAGTGCGATGGGACCCAGCAGATGGAGATGTTCGTCAGTATAATGTCATCTACGTGCCTGTTGCCGGCGGTGCTTCAAGCATGACCCAAGTGTCAGGATTATCCACCAATACTATTCTGAGAAACCTGCAGCCAGACACGGAGTACAGGGTCACCGTAATACCAGTATATCCAGATGCCGAAGGAAAGAAACAGTCTGAGAATGGGAAAACAAAGCCTCTGGGTGGAGTGAAAAACCTGCAGGTTACTGATCCCACAACCAGCTCGTTGAAGGTGCGCTGGGAGCCCGCTGAGGGTAACGTCCGGCAGTATCGAATCTTCTACGTTCCAGCATCTGGTGGTGCAGAGGACATGGAGCAAGTTTCTGGAGGCACCACCAACACCGTCCTGAGGAACCTTCTGTCAGACACGGTCTATACTGTGACTGTGGTTCCTGTTTTTCCAGAGGGAGAGGGTCTCCGGCAGTCTGAGAAAGGAAAGACACTTCCAAGAGTCCCACCCCGGAATATCCTGGTCTACAACCCATCTCCCAACACTCTGAATGTGCGCTGGGAACCCGCCTCGGGCCAGGTGCAGCAGTACAGGGTCGTCTACACCCCGCTGAGTGGGGTCCGGTCTCGTGAGTCTGTTCTCATTCCTGGCAACGTCAACAATGCTTTCCTGGATCAGCTCATCCCGGATACTCCATACTCTGTGAACGTGATGGCGGTATATGCTGATGGAGAAGGCCCGGGAATTGACGGAAAAGGAAAAACATTACCACGAGCTGGACCCAGGAACATGAGGGTCTTTGAAACCACCACAAGCACGATCAGCATCGGCTGGGATCACGCTGAGGGTCCCGTGCAACAATATAAGATTGCGTACGCTCCATTGACAGGAGATCCAATCACAGAATTTACTGTTGTTCCTGGCAACAGAAATAATGCTATCCTTCAAAATCTGCTTCCTGACACCCCATACAACATCACCGTTACAGCAGTTTATCCCGAGGGACCTGGCGGATCCCTGAACGGAAATGGAAAAACACTTGGCCTGCTGGAACCTCAGAACCTACGTGTCTCAGACGAGTGGTACACGCGTTTCCGTGTGTCCTGGGATCCGGCTCCAGCTCCAGTCTTGGGTTACAAACTAGTCTATCAACCAACAGATAAAGACGAGTCTTTGGAGGTGTTTGTTGGTGATGTCACCAGCTATACCCTACATAACCTGCTTCCTGGCACAACGTACGACGTTCAGGTGTACGCCCAATATGATGGCGGTATTAGCAAACCTCTCACGGGACAAGGGACAACATTGTACCTCAATGTGACCAACCTTGAGACATACGACGTTGGCTATGACAGGTTCTGCGTTAAATGGACTCCTCACCGTGCCGCCACATCTTACAGAATCAAGCTTAATCCTCTGGACCCGGCAGCTAAAGGTCAGCAGGAGATCACCATCACTGCAGGCCAGAGTCAGTACTGTTTCGAAGGTTTGAGCCCGGACTCCCTGTACAGCGCCACAGTGTTTGTCCAGACACCCAATCTAGAAGGGCCCGGAGTCAGTACCAGAGAACGCACCCTTGTTAAACCAACACCGGTGCCAACAAAACCACCCACTCCTCCACCACCACCCACTATTCCACCCGGCTGGGCAGTATGCAAAGGAGCAAAAGCAGACGTGGTTTTCCTCATCGATGGCTCCTGGAGTATCGGAGATGAGAGTTTCAACAAAGTGATCCAGTTTGTCTTCAGCGTAGTTGGCGCCTTTGATGTTATCGGCCCGTCGGGAATGCAGGTTTCATTTGTGCAGTACAGTGATGATGCAAAGACTGAGTTCCGGCTCAACGCGTATAACGATAAAGGCACCGTGCTCTCTGCACTGAAACTCATCCGTTACAGGGGAGGAAACACAAAGACAGGTGTGGCTCTGAAGCATGTATATGAGAAGGTCTTCACTCTTGACAATGGAATGAGGAGAAACGTACCGAAGGTAGTGGTGGCCGTGACAGATGGACGTTCTCAGGATGAAGTGAAGAAAAATGCTGCCAAGCTACAGCATGCTGGTTACAGCGTGTTTGTTATTGGAGTTGCTGACGTGGACTTCGTTGAGCTTCAGAACATCGCCAGCAAACCAAGCGAGCGTCACGTCTTTGTGGTGGACGACTTTGATGCCTTCTCCACCATTCAGGACAACCTGGTCACATTCATCTGTGAAACTGCAACATCCTCCTGTCCATTGATCTATGTAAATGGATTCACATCACCAGGATTCAGAATGCTGGAAGCTTTCAATCTGACTGAGAAGATGTATGCTAGCACGAAGGGTGTCTCTATGGAGCCCGGTTCCTTCAACAGCTACACTGCCTACAGGCTCCACAAGAATGCTTTCCTGAACCAGCCCTCATCATATATTCATCCTGATGGCCTGCCTTCCACATACACCATCATTCTGATGTTCCGACTGTTGCCGGACTCACCGAACGAGGCCTTCGATATCTGGCAGGTGTCAGACAAGAATTACAAACCAGAAACTGGTGTCACCATCGACCCATCCGCCCAAACTGTGTCGTTTTATAATAAGGATACAACAGGAGAGATCCAACGAGTCACGTTTAAAAATGATCAAATCAAGAGGATCTTCCATGGAAGCTTCCACAAGCTCCACATCCTGGTGTCTTCCAAGAGTGTCAAGCTGAACGTGGACTGCCAGGAAGTGGCTGAGAAGGAGATTAAACCAGCAGGAAACACATCGACGGATGGATTTCAGGTGCTCGGCAAAATGTCCAAATCTATTGGATCAAGAGGAGAATCAGCAACGTTTCAGCTCCAGATGTTTGACATTGTGTGCAGTCTCGGCTGGACCAGCAGGGACAGATGTTGTGACCTTCCTTCAATGAGAGATGAATCCAAGTGTCCAGCTCTTCCCAACGCCTGCACATGCTCTTCAGACAGCACGGGACCCCAGGGGCCTCAGGGGCCAGTGGGTGCTCCAGGAAGCAAAGGACCACGAGGGGAGAGAGGAGAAACCGGTCAAGTTGGTCCGATCGGCCCACGTGGAGACATGGGTTTGCCTGGTCCGATGGGCCCTCCAGGACCACAGGGCCCTAGTGGGCTCTCCATGCCGGGCGAGGCTGGTCGTCCAGGTCCAAAGGGGGATCCAGGCGATGCTGGCTTACCTGGACAGAAAGGTCCACCGGGACCGGCTGGTGCCATCGGGCCTATTGGACCGGCTGGAATAAGGGGACCTCCAGGGAAGGAGGGGCCGGCGGGATCCACAGGCCCACAAGGACCAATGATGTTAGACTGTATTGCAGACATCTGTTTTGCTGAAGACCAGAGCTGTTATTCTTTTGTTCAGGGACCCCCAGGAGCCCCTGGAATGCCAGGACCTACTGGAAAGCCTGGAAAGAATGGAGATACAGGTGTTCCGGGACCTTCTGGGGTTAAAGGAGACAAAGGAGAGAGAGGAGATATCGCATCTCAGAGCATGATGCGCTCCATTGCCAGACAAGTCTGCGAACAGCTCGTGAACGGACAAATGGGTCGATTCAACGAAATGCTGAACCAGATCCCCAACAACTATCACAGCAACAGTCCAGGCCCATCCGGCCCTCCTGGACCTCCCGGACCCGAGGGACCGCGTGGAGAGCCCGGTCGAATGGGCAGGAATGGCCTTCCTGGTAGTCCAGGGTTGCCTGGTCGGCAGGGAGAGCGAGGACCAGCTGGAGAGAAAGGAGACAGAGGAAGTCCAGGCGTTGGAGAGAGAGGACAGAGAGGACCCCCTGGACCACCTGGCCTACAAGGTGAGTCCAGAACCGGCCCTCCTGGTCCGAGCGGCTCTCCGGGCGCTCGCGGTCCGCCTGGTCGCAACGGTGTCGCCGGTGTACGTGGTCCTCCCGGCCCACCTGGCTACTGTGACTCCTCTCAGTGTGTCGGTATGCCATATAACGGACAGGGTTACAGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_06606850_06665941.mRNA True 8448 mRNA 0.52 65 6606850 6666150

Neighbor

gene id symbol gene type direction distance location
CI01000029_06486658_06492567 NA coding downstream 114283 6486470 ~ 6492567 (-)
CI01000029_06449255_06451786 NAA20.S, NAA20, RIN2 coding downstream 155064 6449112 ~ 6451786 (-)
CI01000029_06431763_06439215 NA coding downstream 167635 6431720 ~ 6439215 (-)
CI01000029_06410464_06420256 CFAP61 coding downstream 186594 6410022 ~ 6420256 (-)
CI01000029_06406402_06408397 INSM1A coding downstream 198453 6406069 ~ 6408397 (-)
CI01000029_06666877_06679215 NA coding upstream 680 6666830 ~ 6679215 (-)
CI01000029_06689615_06698873 NA coding upstream 23387 6689537 ~ 6698873 (-)
CI01000029_06719634_06722376 NA coding upstream 53377 6719527 ~ 6723172 (-)
CI01000029_06739098_06769987 NA coding upstream 72564 6738533 ~ 6769987 (-)
CI01000029_06798103_06806327 EXTL3 coding upstream 131890 6798040 ~ 6806846 (-)
G156362 NA non-coding downstream 10150 6596489 ~ 6596700 (-)
G156359 NA non-coding downstream 28357 6578261 ~ 6578493 (-)
G156358 NA non-coding downstream 28666 6577901 ~ 6578184 (-)
G156357 NA non-coding downstream 30864 6575727 ~ 6575986 (-)
G156345 NA non-coding downstream 67529 6538523 ~ 6539321 (-)
G156322 NA non-coding upstream 16541 6682691 ~ 6687634 (-)
G156332 NA non-coding upstream 22602 6688752 ~ 6689050 (-)
G156380 NA non-coding upstream 94914 6761064 ~ 6761314 (-)
CI01000029_06832914_06833074 NDUFB1 non-coding upstream 120263 6831854 ~ 6833074 (-)
G154415 NA other downstream 1619425 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 2129638 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 2899598 3698572 ~ 3707883 (-)
G153891 NA other downstream 3320296 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 4014048 2587549 ~ 2592379 (-)
G156542 NA other upstream 504217 7170367 ~ 7170951 (-)
G156495 NA other upstream 700177 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003589 col12a1,col12a1a,LOC108428624 coding CM030121.1 CM030121.1 10871341 ~ 10944875 (-)