CI01000029_06798103_06806327 (EXTL3)


Basic Information

Item Value
gene id CI01000029_06798103_06806327
gene name EXTL3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6798040 ~ 6806846 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_06798103_06806327.mRNA
ACTGATTTGTTGTTTTCTAAAATGATCTGATACATGTTCTATGTGCAAATATCTGATACTTGCTCTCTGTTTTACAGATTGAATGCAGTTGGATGGCATACAGTGTCTCCAAGAGTTCATGGCACACTGTGGCCAATTCATGAGTCCCAACTATGGAAGAGTGACCGGAGTATGATGCCACAAAGAAAAATGAAGATCAGCCATGCCTCCATTGCTGATCTCCATCAAGGACACTCAGTTTTTACTGCTGTCTGGGACTCTCCTTCTTCTCTTGGATAGTTTCAGTTTCAACATACATCATACCACACGCAAGACCGTGTTGTTTATGGACGATATCATTCTGTCACGAGAAAGATGAAATTTCCCTTTATTAGAAGTCCCAATTAAAACAAGGACTCAAAAGTTACAAACTCTGGAAACTCAAAAGTGTACAGTACAGATGAAGTTGCATTATGGCAGCTGAATCTCTTCAGCAGCTGCATTCACGTATCTGGTTCGGAGGAGAGTGATAGTTGCACGATGCAGCGAAGTGGAGGCATCATCGGGAACAATGGCCAGCCATGGGTTCTGCGGCGAGTACGGCTCACCTGGCTCAGTTTCATGCTCTTCTTCATCCTGGTCTTCTTCCCTCTCATTGCACATTACTACCTCACCACAATCGATGAAGCAGGGGGACCAGATAAGCGCATTTTTGGGCCAAGACCTGGAGGAGAGCTGTGTGAAGCAAAGCACGTACAAGACCTGTGTCGAATACGGGAATCTGTCAGCGAGGAGCTACTTCAGCTTGAGGCAAAGCGTCAAGAGCTCAATGGCGAGATAGCCCGACTTAACCTACGCATCGAGGCTTGTAAACGTAGTATCGACAGTGCCAAACAAGACTTGCTTCAACTCAAAAATGTCATCAGCCAGACAGAGCACTCTTACAAGGAACTTATGGCACAAAACCAGCCAAAACTGTCGTTGCCAGTTAGACTTTTACCAGACAAGGATGATCCTGGATACCCTCCTCCGAAGTCGGCCCAAAGCTGTCGTTTGCATTCTTGCTTTGATTATGCTAGATGTCCACTTACATCTGGTTTCCCTGTCTATGTTTATGACACAGGATCATATCCTTGGGGTGAGAAGTTGGACCCACTTGTCAAACAAGCCTTCGCATCATCTGTCAAAAGCAGTGTATATGTGACCAATAATCCAAACATTGCCTGTCTGTACATAGTGCTTGTTGGGGAAATACAAGAATCACCTTCCTCTACCCCTGCTTCACCTTTAGACCTTGAAAAGCAGCTCAAGGCTTTGCCGTATTGGAGGTTGGACGGCCACAACCACCTCCTTGTCCATCTTTCTAGAAAGTCTCTGACTCAGAACTTCCTGTACAATGTGAGCACAGGACGAGCAGCAGTGGCACAGTCTACCTTTTTTGAACGTCAATATAGAGAAGGTTTCGACATGGTGGTGTCTCCTCTGGTCCACGCTCTGTCTGAGCCCAACTTCCTAGAGGTGCCTCCGCAAGTCCCTGTCAAGAGGAAGTACCTCTTTACCTTTCAGGGAGAAAAGGTTGAGTCTTTGAGGAGCAGCTTGCTTGAAGCCCCACCACAGTCCTTTGAGGAGGAAATGGAAGGGGATCCACCAGCTGACTATGATGATCGTATTATCGGCACACTTAAAGCTGTACAGGACAGTCACCTAGACCAGGTTCTTGTGGAGTTCACTTGCAAGAATCAGCCCAAGCCAAGTTTACCAACAGAGTGGGCATTGTGTGGCGAGCGCGAGGATCGTTTAGAGGTACTGAAGGTTTCTACATTTGCCCTGGTGATATCTCCAGGTGATGGCCAGTTGGTTGCATCTGCTGGCTGTAGCATGAGACTTTTTGAGGCTTTGGAAGTTGGGGCAATACCGGTGGTGCTTGGCGACCACTCAAAGTTGCCCTACCATCACCTCATACGCTGGAGTGAGGCAGTCATTATGGTACCCAAGCCTCGCATTACTGAGCTGCACTTTCTGTTGCGTAGCATCTCAGACAATGATCTTCTGGCCATGCGACGACAGGGTCGGTTTCTTTGGGAGACGTACTTCTCCACCTCAGAGAGCATCTTTAGCACCATCCTGGCTAGTGTACGAACCAGCATCCAGATACCAGCAGCACCCATACGTGAGGAGCCTGCCCAGGAGATTCCCCACAAAGCTGGAAAGTTGGCAGGAACCGATGCTAACATGGCTGACAATGGCGACCTCGATCTAGGGCCTGTTGAAGTAGAGCCCCCTTATGCCTCGCCACGCTTCTTGCGTAACTTCACGTACACAGTTGCTGATGTCTACCGCACCTGGAATCGTGCACCTGGCCCTTTCCATCTATTCCCACATACTCCCTTGGACCCTGTACTTCCTTCAGAGGCCAAGTTTCTGGGGTCGGGGACTGGTTTCCGCCCTATCGGTGGTGGTTCTGGGGGATCTGGTAAAGAGTTTCAGGCCGCTCTTGGAGGTAACGTTCCACGGGAGCAGTTCACTGTGGTCATGCTTACTTATGAACGGGAGGAGGTTCTTATGAACTCACTGGAAAGACTAAATGGTCTTCCTTATCTCAACAAAGTGGTGGTAGTGTGGAATTCCCCCAAACCACCTTCTGATGATCTGCTCTGGCCAGACATTGGTCTACCTATTGTGGTGGTTCGCACAGAGAAAAACAGCTTAAACAATCGTTTCCTTCCCTGGGATGCAGTCGAGACTGAGGCTATTTTGTCTATTGATGATGATGCCCATCTTCGACATGATGAAATTATGTTTGGGTTCAGGGTGTGGCGGGAGGCCAGAGACCGGATTGTGGGGTTCCCGGGAAGGTTTCATGCATGGGATGTAAATCACCAATCTTGGCTCTACAATTCCAACTACTCCTGCGAGCTCTCCATGGTGCTGACGGGTGCGGCCTTCTTCCATAAGTATTACGCATACCTCTATTCCTATGTCATGCCTCAAGCTATACGTGACATGGTGGACGAGTACATCAACTGTGAGGATATCGCCATGAACTTCCTCGTGTCGCATATCACTCGCAAACCCCCCATCAAGGTGACGTCACGTTGGACCTTCCGCTGTCCCGGCTGTCCACAGGCTCTGTCACATGACGATTCGCACTTCCATGAGCGCCACAAGTGCATCAACTTCTTCGTAAAAGTCTACGGATACATGCCGCTGTTATACACTCAGTTCAGAGTGGACTCGGTACTCTTCAAGACGCGATTGCCGCACGACAAGACAAAATGTTTTAAATTCATTTAACGGAACAAGCACAGAAATCCTGACACGGGAAGGTCTCTCTCTGGGAACGTGAAGGGAATTAAA

Function

symbol description
extl3 Predicted to enable glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity. Acts upstream of or within several processes, including axon guidance; embryonic pectoral fin morphogenesis; and proteoglycan biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in nervous system and pectoral fin musculature. Orthologous to human EXTL3 (exostosin like glycosyltransferase 3).

GO:

id name namespace
GO:0033339 pectoral fin development biological_process

KEGG:

id description
K02370 EXTL3; alpha-1,4-N-acetylglucosaminyltransferase EXTL3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_06798103_06806327.mRNA True 3336 mRNA 0.49 5 6798040 6806846

Neighbor

gene id symbol gene type direction distance location
CI01000029_06739098_06769987 NA coding downstream 28053 6738533 ~ 6769987 (-)
CI01000029_06719634_06722376 NA coding downstream 74868 6719527 ~ 6723172 (-)
CI01000029_06689615_06698873 NA coding downstream 99167 6689537 ~ 6698873 (-)
CI01000029_06666877_06679215 NA coding downstream 118825 6666830 ~ 6679215 (-)
CI01000029_06606850_06665941 NA coding downstream 131890 6606850 ~ 6666150 (-)
CI01000029_06832914_06833074 NDUFB1 coding upstream 25863 6831854 ~ 6833074 (-)
CI01000029_06921800_06922750 TMEM121A, TMEM121B, TMEM121 coding upstream 114435 6921281 ~ 6923115 (-)
CI01000029_07332828_07336542 ATP6V1D coding upstream 525449 7332295 ~ 7336542 (-)
CI01000029_07346183_07362585 RBM25.S, RBM25, RBM25B coding upstream 539219 7346065 ~ 7362585 (-)
CI01000029_07388885_07402311 SLC35B2 coding upstream 581398 7388244 ~ 7402678 (-)
G156380 NA non-coding downstream 36726 6761064 ~ 6761314 (-)
G156332 NA non-coding downstream 108990 6688752 ~ 6689050 (-)
G156322 NA non-coding downstream 110406 6682691 ~ 6687634 (-)
G156362 NA non-coding downstream 201340 6596489 ~ 6596700 (-)
G156396 NA non-coding upstream 45278 6852124 ~ 6852324 (-)
G156400 NA non-coding upstream 54108 6860954 ~ 6861244 (-)
G156401 NA non-coding upstream 54585 6861431 ~ 6861757 (-)
G156410 NA non-coding upstream 75741 6882587 ~ 6886699 (-)
G156416 NA non-coding upstream 86368 6893214 ~ 6902216 (-)
G154415 NA other downstream 1810615 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 2320828 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 3090788 3698572 ~ 3707883 (-)
G153891 NA other downstream 3511486 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 4205238 2587549 ~ 2592379 (-)
G156542 NA other upstream 363521 7170367 ~ 7170951 (-)
G156495 NA other upstream 559481 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018448 extl3 coding NC_007131.7 CM002904.2 49940818 ~ 50014936 (-)