G154378


Basic Information

Item Value
gene id G154378
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5005670 ~ 5005961 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU175275
CATCTAGTGCCCTTACATGAAGTCAGATTACTCTAACACTTATAATCATCCTGTATAAAAGATGATTTGAGAAAAATTGTTCATTCTTGCTGAAAACCTTTCTGTGCTGGTCTGCTATGATTTGAGATGTAAAACACAGATCAAGCATAACATTATGACCACTGACAGGTGAAGTGAATAACACTGATCATCTCTTCATCACGGCACCTGTTAGTGGGTGGGATATATTAGGCAGCAAGTGAACATTTTGTCCTCAAAGTTGATGTGTTAGAAGCAGGAAGAATGGGCAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175275 True 292 lncRNA 0.39 1 5005670 5005961

Neighbor

gene id symbol gene type direction distance location
CI01000029_04981453_04995255 NA coding upstream 10008 4981145 ~ 4995662 (+)
CI01000029_04590418_04605290 NA coding upstream 399976 4590284 ~ 4605694 (+)
CI01000029_04521600_04521771 NA coding upstream 482919 4521600 ~ 4522751 (+)
CI01000029_04478628_04483582 NA coding upstream 522069 4476420 ~ 4483601 (+)
CI01000029_04409794_04419021 OPN8B coding upstream 586649 4409794 ~ 4419021 (+)
CI01000029_05041887_05044363 NA coding downstream 35036 5040997 ~ 5045063 (+)
CI01000029_05104260_05107686 BMP2B coding downstream 97258 5103219 ~ 5107804 (+)
CI01000029_05232703_05233677 TAAR11 coding downstream 224231 5230192 ~ 5234070 (+)
CI01000029_05267765_05268790 TAAR64, TAAR13E, TAAR13D, TAAR13C, TAAR13B coding downstream 261729 5267690 ~ 5268884 (+)
CI01000029_05274996_05279739 TAAR64, TAAR13E, TAAR13D, TAAR13C, TAAR13B coding downstream 268863 5274824 ~ 5279770 (+)
G154341 NA non-coding upstream 18272 4986762 ~ 4987398 (+)
G154372 NA non-coding upstream 28147 4977231 ~ 4977523 (+)
G154371 NA non-coding upstream 28684 4976728 ~ 4976986 (+)
G154368 NA non-coding upstream 32144 4973178 ~ 4973526 (+)
G154366 NA non-coding upstream 42102 4963348 ~ 4963568 (+)
G154334 NA non-coding downstream 11474 5017435 ~ 5018652 (+)
G154342 NA non-coding downstream 13787 5019748 ~ 5023290 (+)
G154335 NA non-coding downstream 18920 5024881 ~ 5025182 (+)
G154340 NA non-coding downstream 43025 5048986 ~ 5049387 (+)
G154398 NA non-coding downstream 55093 5061054 ~ 5061415 (+)
G153790 NA other upstream 265563 4733589 ~ 4740107 (+)
G153475 NA other upstream 1443666 3545125 ~ 3562004 (+)
G152451 NA other upstream 2242731 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 3477771 1526754 ~ 1527899 (+)
G151495 NA other upstream 4633748 366541 ~ 371922 (+)
G154587 NA other downstream 265059 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 451280 5461497 ~ 5470346 (+)
G155079 NA other downstream 1276724 6282685 ~ 6288398 (+)
G155083 NA other downstream 1425574 6431535 ~ 6490294 (+)
CI01000029_06906861_06907157 NA other downstream 1900227 6905834 ~ 6908633 (+)

Expression


Co-expression Network