Gene
RNA
| Item | Value |
|---|---|
| gene id | G155193 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 6603095 ~ 6607105 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU176219 | True | 1132 | lncRNA | 0.39 | 2 | 6603095 | 6607105 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000029_06494856_06495812 | NA | coding | upstream | 107248 | 6494391 ~ 6495847 (+) |
| CI01000029_06453008_06476863 | NA | coding | upstream | 126005 | 6453008 ~ 6477090 (+) |
| CI01000029_06443365_06447942 | CRNKL1 | coding | upstream | 155153 | 6443365 ~ 6447942 (+) |
| CI01000029_06347167_06348123 | NA | coding | upstream | 254926 | 6346660 ~ 6348169 (+) |
| CI01000029_06305668_06307332 | NKX2.4B | coding | upstream | 295420 | 6305245 ~ 6307675 (+) |
| CI01000029_06724205_06734079 | HMBOX1B, HMBOX1 | coding | downstream | 117100 | 6724205 ~ 6735582 (+) |
| CI01000029_06775631_06791278 | INTS9 | coding | downstream | 168526 | 6775631 ~ 6791346 (+) |
| CI01000029_06824397_06831521 | CUNH14ORF169 | coding | downstream | 216524 | 6823629 ~ 6832671 (+) |
| CI01000029_06834812_06849277 | CPSF2 | coding | downstream | 226472 | 6833577 ~ 6849518 (+) |
| CI01000029_06865685_06903896 | SLC24A4, SLC24A4B | coding | downstream | 258580 | 6865685 ~ 6903896 (+) |
| G155196 | NA | non-coding | upstream | 564 | 6602316 ~ 6602531 (+) |
| G155186 | NA | non-coding | upstream | 24601 | 6578275 ~ 6578494 (+) |
| G155162 | NA | non-coding | upstream | 88117 | 6514727 ~ 6514978 (+) |
| G155142 | NA | non-coding | upstream | 170290 | 6431948 ~ 6432805 (+) |
| G155128 | NA | non-coding | upstream | 211102 | 6391776 ~ 6391993 (+) |
| G155194 | NA | non-coding | downstream | 65832 | 6672937 ~ 6680968 (+) |
| G155218 | NA | non-coding | downstream | 81650 | 6688755 ~ 6689078 (+) |
| G155236 | NA | non-coding | downstream | 82176 | 6689281 ~ 6689937 (+) |
| G155248 | NA | non-coding | downstream | 114858 | 6721963 ~ 6722184 (+) |
| G155235 | NA | non-coding | downstream | 115239 | 6722344 ~ 6722557 (+) |
| G155083 | NA | other | upstream | 112801 | 6431535 ~ 6490294 (+) |
| G155079 | NA | other | upstream | 314697 | 6282685 ~ 6288398 (+) |
| CI01000029_05461497_05468985 | BATF | other | upstream | 1132749 | 5461497 ~ 5470346 (+) |
| G154587 | NA | other | upstream | 1331560 | 5271020 ~ 5271535 (+) |
| G153790 | NA | other | upstream | 1862988 | 4733589 ~ 4740107 (+) |
| CI01000029_06906861_06907157 | NA | other | downstream | 299083 | 6905834 ~ 6908633 (+) |
| G155522 | NA | other | downstream | 1027728 | 7634833 ~ 7637834 (+) |
| G155627 | NA | other | downstream | 1324375 | 7931480 ~ 7932177 (+) |
| G156007 | NA | other | downstream | 2357713 | 8964818 ~ 9064541 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_017700 | NA | non-coding | NC_007131.7 | CM002904.2 | 49450993 ~ 49459757 (+) |
