G156322


Basic Information

Item Value
gene id G156322
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6682691 ~ 6687634 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU177486
GAGACTTTCCTCTTCCTCTTGCCACGCTTCAGTTTCTCTCTCTCTCAGTCAGTCTCGTGACTTCAGTCATTCACGCTGAAAATGTTTCGCCACATTCTGACTCTTCAGCAGGTTTCCAGACGGCACATCTCCAGTACCGTCCGCAGGCAGCTGCCAAATAAGGTGCCAGAGAAGCAGAAACTATTTCAGGAGGCTAATGGGATGCCAGTTCATCTGAAGGGAGGAGTCAGTGATGCTGTTCTTTACCGTGCAACTATGGGTCTCACACTGATGGGAACTGCATGCGTCATATATGAACTAGTAAAGGCAGCTGTGCCTCAGAAGAAGGACTGATGGCAGATCCTGCCCTCATTTCTGTTGAAATGTGACGTTATGAGCGTTTCACACAATATATTTATTCTTTCATTTGGAAGGTAAAAGGGACCAAAGTGATTTGAATAAAACAAACTGTACCTGTCATAAACAGACAAATCCTGATTGTTTTACTTCACTCAATGACAATATAAACGCCCCAAAATTAAAATAAAACATTTTGCATAAAGAAAAGTACTATTTTAAGACTTTTGCATTGCACACATTGATTTTCTTTATGCAAAATGTAATTGAATTTCTTTTGATTTTGGGGTGTAATGTTACCTACTTTAGATCTTTCTAAGATGGTGATTCATCTTTAATTCCAGCAACTGATGAGGTTTAATTTGTTTGTCTTCTGATTTCATACCTTCTCCTTTTGAG
>TU177487
GAGACTTTCCTCTTCCTCTTGCCACGCTTCAGTTTCTCTCTCTCTCAGTCAGTCTCGTGACTTCAGTCATTCACGCTGAAAATGTTTCGCCACATTCTGCAGGTTTCCAGACGGCACATCTCCAGTACCGTCCGCAGGCAGCTGCCAAATAAGGTGCCAGAGAAGCAGAAACTATTTCAGGAGGCTAATGGGATGCCAGTTCATCTGAAGGGAGGAGTCAGTGATGCTGTTCTTTACCGTGCAACTATGGGTCTCACACTGATGGGAACTGCATGCGTCATATATGAACTAGTAAAGGCAGCTGTGCCTCAGAAGAAGGACTGATGGCAGATCCTGCCCTCATTTCTGTTGAAATGTGACGTTATGAGCGTTTCACACAATATATTTATTCTTTCATTTGGAAGGTAAAAGGGACCAAAGTGATTTGAATAAAACAAACTGTACCTGTCATAAACAGACAAATCCTGATTGTTTTACTTCACTCAATGACAATATAAACGCCCCAAAATTAAAATAAAACATTTTGCATAAAGAAAAGTACTATTTTAAGACTTTTGCATTGCACACATTGATTTTCTTTATGCAAAATGTAATTGAATTTCTTTTGATTTTGGGGTGTAATGTTACCTACTTTAGATCTTTCTAAGATGGTGATTCATCTTTAATTCCAGCAACTGATGAGGTTTAATTTGTTTGTCTTCTGATTTCATACCTTCTCCTTTTGAG
>TU177488
GAGACTTTCCTCTTCCTCTTGCCACGCTTCAGTTTCTCTCTCTCTCAGTCAGTCTCGTGACTTCAGTCATTCACGCTGAAAATGTTTCGCCACATTCTGGTTTCCAGACGGCACATCTCCAGTACCGTCCGCAGGCAGCTGCCAAATAAGGTGCCAGAGAAGCAGAAACTATTTCAGGAGGCTAATGGGATGCCAGTTCATCTGAAGGGAGGAGTCAGTGATGCTGTTCTTTACCGTGCAACTATGGGTCTCACACTGATGGGAACTGCATGCGTCATATATGAACTAGTAAAGGCAGCTGTGCCTCAGAAGAAGGACTGATGGCAGATCCTGCCCTCATTTCTGTTGAAATGTGACGTTATGAGCGTTTCACACAATATATTTATTCTTTCATTTGGAAGGTAAAAGGGACCAAAGTGATTTGAATAAAACAAACTGTACCTGTCATAAACAGACAAATCCTGATTGTTTTACTTCACTCAATGACAATATAAACGCCCCAAAATTAAAATAAAACATTTTGCATAAAGAAAAGTACTATTTTAAGACTTTTGCATTGCACACATTGATTTTCTTTATGCAAAATGTAATTGAATTTCTTTTGATTTTGGGGTGTAATGTTACCTACTTTAGATCTTTCTAAGATGGTGATTCATCTTTAATTCCAGCAACTGATGAGGTTTAATTTGTTTGTCTTCTGATTTCATACCTTCTCCTTTTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU177486 False 735 lncRNA 0.40 4 6682691 6687634
TU177487 False 726 lncRNA 0.40 4 6682691 6687634
TU177488 True 723 lncRNA 0.39 4 6682691 6687634

Neighbor

gene id symbol gene type direction distance location
CI01000029_06666877_06679215 NA coding downstream 3476 6666830 ~ 6679215 (-)
CI01000029_06606850_06665941 NA coding downstream 16541 6606850 ~ 6666150 (-)
CI01000029_06486658_06492567 NA coding downstream 190124 6486470 ~ 6492567 (-)
CI01000029_06449255_06451786 NAA20.S, NAA20, RIN2 coding downstream 230905 6449112 ~ 6451786 (-)
CI01000029_06431763_06439215 NA coding downstream 243476 6431720 ~ 6439215 (-)
CI01000029_06689615_06698873 NA coding upstream 1903 6689537 ~ 6698873 (-)
CI01000029_06719634_06722376 NA coding upstream 31893 6719527 ~ 6723172 (-)
CI01000029_06739098_06769987 NA coding upstream 51080 6738533 ~ 6769987 (-)
CI01000029_06798103_06806327 EXTL3 coding upstream 110406 6798040 ~ 6806846 (-)
CI01000029_06832914_06833074 NDUFB1 coding upstream 145075 6831854 ~ 6833074 (-)
G156362 NA non-coding downstream 85991 6596489 ~ 6596700 (-)
G156359 NA non-coding downstream 104198 6578261 ~ 6578493 (-)
G156358 NA non-coding downstream 104507 6577901 ~ 6578184 (-)
G156357 NA non-coding downstream 106705 6575727 ~ 6575986 (-)
G156345 NA non-coding downstream 143370 6538523 ~ 6539321 (-)
G156332 NA non-coding upstream 1118 6688752 ~ 6689050 (-)
G156380 NA non-coding upstream 73430 6761064 ~ 6761314 (-)
G156396 NA non-coding upstream 164490 6852124 ~ 6852324 (-)
G154415 NA other downstream 1695266 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 2205479 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 2975439 3698572 ~ 3707883 (-)
G153891 NA other downstream 3396137 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 4089889 2587549 ~ 2592379 (-)
G156542 NA other upstream 482733 7170367 ~ 7170951 (-)
G156495 NA other upstream 678693 7365007 ~ 7371921 (-)

Expression


Co-expression Network