G156492


Basic Information

Item Value
gene id G156492
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7112253 ~ 7112673 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU177679
AATGAGGTTCATTCTCGTGTTACGCAACACGTTTGAGCTTCAGCAAGAACCAATGAGGTTCATTCTCGTGTTACGCAACACGTTTGAGCTTCTGCAAGAACCAATGAGGTTCATTCTTGTGTTACGCAACACGTTTGAGCTTCTGCAAGAACCAATGAGGTTCATTCTCGTGTTACGCAGCATGTTTGAGCTTCTGCAAGAACCAATGAGGTTCGTTCTCATGTTACGCAGCACGTTTGAGCTTCCGCAAGAACCAATGAGGTTCATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU177679 True 268 lncRNA 0.45 2 7112253 7112673

Neighbor

gene id symbol gene type direction distance location
CI01000029_06921800_06922750 TMEM121A, TMEM121B, TMEM121 coding downstream 189138 6921281 ~ 6923115 (-)
CI01000029_06832914_06833074 NDUFB1 coding downstream 279179 6831854 ~ 6833074 (-)
CI01000029_06798103_06806327 EXTL3 coding downstream 305407 6798040 ~ 6806846 (-)
CI01000029_06739098_06769987 NA coding downstream 342266 6738533 ~ 6769987 (-)
CI01000029_06719634_06722376 NA coding downstream 389081 6719527 ~ 6723172 (-)
CI01000029_07332828_07336542 ATP6V1D coding upstream 219622 7332295 ~ 7336542 (-)
CI01000029_07346183_07362585 RBM25.S, RBM25, RBM25B coding upstream 233392 7346065 ~ 7362585 (-)
CI01000029_07388885_07402311 SLC35B2 coding upstream 275571 7388244 ~ 7402678 (-)
CI01000029_07405933_07416452 NA coding upstream 292870 7405543 ~ 7416952 (-)
CI01000029_07419676_07421496 NA coding upstream 306962 7419635 ~ 7422668 (-)
G156477 NA non-coding downstream 46149 7065768 ~ 7066104 (-)
G156473 NA non-coding downstream 57482 7054429 ~ 7054771 (-)
G156469 NA non-coding downstream 74767 7037181 ~ 7037486 (-)
G156463 NA non-coding downstream 83474 7028558 ~ 7028779 (-)
G156459 NA non-coding downstream 90519 7021086 ~ 7021734 (-)
G156525 NA non-coding upstream 54856 7167529 ~ 7169580 (-)
G156542 NA non-coding upstream 57978 7170367 ~ 7170951 (-)
G156545 NA non-coding upstream 71919 7184592 ~ 7184817 (-)
G156547 NA non-coding upstream 77001 7189674 ~ 7189989 (-)
G156516 NA non-coding upstream 95877 7208550 ~ 7208864 (-)
G154415 NA other downstream 2124828 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 2635041 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 3405001 3698572 ~ 3707883 (-)
G153891 NA other downstream 3825699 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 4519451 2587549 ~ 2592379 (-)
G156495 NA other upstream 253654 7365007 ~ 7371921 (-)

Expression


Co-expression Network