G155953


Basic Information

Item Value
gene id G155953
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8823968 ~ 8837892 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU177065
CCGATGTGTTTGCCGTACATGTGATAGTAGAAGGTGAAGCAGTACGCCGGAGGGCTGGTGATGCTGTAGGGATTCTTGGGGGCGACGTTAAACGTGGGGCTCAACAGACGAGCCGTGTCGCCCTCTTTACGAGGTCTGGAGGTCTCAATGTACATGTAGAAACCCTGCTTTGAGCCGGCCCGATCCGCGCTGGGACCCGTGTTTGGGGTGTATTTAGTGTCGCGGGTGGCGGCGCTGTGTCTCGTCCAATCAAAGTCGTCGTTCTTGTCCTGAGTGAACATGCAAACGGGCTCCTCTTCAAAGCTGCAGTGAAACTCTCTCAGATGAGGATTGACTGGAGCGCTGTACGTGACGATCCTGGTGGTTGAATCTCCCTCTCCGAAGCGTGTGATCGGTGTGAGTCGGACCACGTAGGCCTCGGGTCTGATGAGCTCCGTCAGGTTGTGTGTGATCAGTTCTCCCTTCTGGATATTTCCCTCCACAGGAATCTCCTGCTCCCACCAGCGCTGCTGCCCCGTCTGAAGGAAGAATCAGGCTTACATCAGCTTTACAGGGAAAATAAATTGCTTGCGTTTCCTGTCAAGGTTTTAAAGAGGACCAATTATGCACTTTAACAGTCTTGATGTTGTTTTTGGGCTCTACTAGAGCAGGTTTTCCTGCTTGAATGTTGATTATTTTCCTCATATTCTCCATTGTTGCAGCTCCTCTCTTCCCAGTCTGTCAGTAACGCTCTGTTTAGTTCCTGTCTCTATGAAGCCCCTCCTTCTGAAAAGCACAATGTGCTCTGATTGGTCGGCTGGAGCAGTGTGTTGTGATTGGTCAAGCGCTTAGAGCATGTCAGGCCCCGCTCCTTTATTCTGCGTATGCCTTGGGTTCACACATTTAATGCTAGTAACTCCATCAGTTTGTGCTGGAATTGTGCGACTGACGCCACTAGGCTTTGAACTGAAGCTGCTGGGTTACTGTGAGGTAACAGCTGCAGTTATCTTGGGCTCACTGGTAAATTGGAAAGTGCTGTTTTGTTACTGGTAATCGCTGGC
>TU177066
CCGATGTGTTTGCCGTACATGTGATAGTAGAAGGTGAAGCAGTACGCCGGAGGGCTGGTGATGCTGTAGGGATTCTTGGGGGCGACGTTAAACGTGGGGCTCAACAGACGAGCCGTGTCGCCCTCTTTACGAGGTCTGGAGGTCTCAATGTACATGTAGAAACCCTGCTTTGAGCCGGCCCGATCCGCGCTGGGACCCGTGTTTGGGGTGTATTTAGTGTCGCGGGTGGCGGCGCTGTGTCTCGTCCAATCAAAGTCGTCGTTCTTGTCCTGAGTGAACATGCAAACGGGCTCCTCTTCAAAGCTGCAGTGAAACTCTCCTGGAGAAGAAAGAAGTTCATGCAAACGTGAAATCCTGTCGTCATTTACCCAAACTTTATTCTGTGCAACTGCAAGAATCTTTGAGCTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177065 False 1040 lncRNA 0.51 4 8823968 8837892
TU177066 True 410 lncRNA 0.52 2 8823968 8826656

Neighbor

gene id symbol gene type direction distance location
CI01000029_08759743_08761002 GM2581, RPS29, RPS29.S, GM7618, GM7079 coding upstream 62774 8759696 ~ 8761326 (+)
CI01000029_08743604_08749941 WDR20 coding upstream 73631 8740734 ~ 8750337 (+)
CI01000029_08654610_08655443 NA coding upstream 167418 8652582 ~ 8656550 (+)
CI01000029_08578097_08583564 SLC25A47A coding upstream 239995 8577815 ~ 8583973 (+)
CI01000029_08558693_08564749 MYH6, MYH7, MYH6.S coding upstream 258972 8558263 ~ 8564996 (+)
CI01000029_08915550_08920146 NA coding downstream 76531 8914423 ~ 8920358 (+)
CI01000029_08990637_09003719 NA coding downstream 152665 8990557 ~ 9003779 (+)
CI01000029_09058596_09061088 FKBP3 coding downstream 220704 9058596 ~ 9061323 (+)
CI01000029_09079841_09080368 ARF6.S, ARF6.2, ARF6, ARF6.2.L, ARF6B, ARF6A coding downstream 241101 9078993 ~ 9080635 (+)
CI01000029_09091229_09095666 PELI2 coding downstream 253211 9091103 ~ 9101802 (+)
G155948 NA non-coding upstream 13034 8810608 ~ 8810934 (+)
G155947 NA non-coding upstream 14305 8809332 ~ 8809663 (+)
G155946 NA non-coding upstream 20371 8803207 ~ 8803597 (+)
G155934 NA non-coding upstream 83735 8740021 ~ 8740233 (+)
G155965 NA non-coding downstream 12235 8850127 ~ 8850592 (+)
G155980 NA non-coding downstream 42556 8880448 ~ 8880791 (+)
G156010 NA non-coding downstream 222739 9060631 ~ 9067203 (+)
G156007 NA non-coding downstream 224846 8964818 ~ 9064541 (+)
G155627 NA other upstream 891791 7931480 ~ 7932177 (+)
G155522 NA other upstream 1186134 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 1916536 6905834 ~ 6908633 (+)
G155083 NA other upstream 2333674 6431535 ~ 6490294 (+)
G155079 NA other upstream 2535570 6282685 ~ 6288398 (+)

Expression


Co-expression Network