CI01000029_08759743_08761002 (GM2581, RPS29, RPS29.S, GM7618, GM7079)


Basic Information

Item Value
gene id CI01000029_08759743_08761002
gene name GM2581, RPS29, RPS29.S, GM7618, GM7079
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8759696 ~ 8761326 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_08759743_08761002.mRNA
ATGGGCCATCAGCAGCTCTACTGGAGTCATCCTAGAAAATACGGCCAGGGATCCAGATCCTGCCGAGTTTGCTCAAACAGACACGGTCTGATCCGTAAATACGGACTCAACATGTGCCGTCAGTGCTTCAGACAGTACGCTAAAGATATCGGCTTCGTCAAGGCAAGTATCATTGCATTTTAATCTAATTGTGTTTAGAGTAATTTGCATTTCACTCATTTGTAGATTTAATTTCAATTGGTTGCATTGTAAAACTGACCTATTTCTCTTCTCTTGCTTTATTAATCCAGCTGGACTAAACCTGTGGACAGCTGAACTTCCATGATGAGGAATCAACATCCAACCTGACGTCATGAAGTTACATTGGAAAGTTCA
>TU176849
CGCACAAGCTCGACTTCCTTTTCGACATCCCGATCGAGAGAGACGAGATGGGCCATCAGCAGCTCTACTGGAGTCATCCTAGAAAATACGGCCAGGGATCCAGATCCTGCCGAGTTTGCTCAAACAGACACGGTCTGATCCGTAAATACGGACTCAACATGTGCCGTCAGTGCTTCAGACAGTACGCTAAAGATATCGGCTTCGTCAAGCTGGACTAAACCTGTGGACAGCTGAACTTCCATGATGAGGAATCAACATCCAACCTGACGTCATGAAGTTACATTGGAAAGTTCAATAAACATGTTTTCTTTCTGTTCAAAAGTTTCAATGCGTCTTAATTATAGAGGGAATGGAAAAGGTTTGAGTTCAGTGAACTGATGGATTATTGGTAGTTATGCTTTGTTTCCACATGAACTACCTTTTACT

Function

symbol description
rps29 Predicted to enable zinc ion binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within several processes, including blood vessel morphogenesis; hemopoiesis; and intrinsic apoptotic signaling pathway by p53 class mediator. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 13. Orthologous to human RPS29 (ribosomal protein S29).

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG:

id description
K02980 RP-S29e, RPS29; small subunit ribosomal protein S29e

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_08759743_08761002.mRNA False 375 mRNA 0.42 2 8759743 8761194
TU176849 True 426 lncRNA 0.44 3 8759696 8761326

Neighbor

gene id symbol gene type direction distance location
CI01000029_08743604_08749941 WDR20 coding upstream 9406 8740734 ~ 8750337 (+)
CI01000029_08654610_08655443 NA coding upstream 103193 8652582 ~ 8656550 (+)
CI01000029_08578097_08583564 SLC25A47A coding upstream 175770 8577815 ~ 8583973 (+)
CI01000029_08558693_08564749 MYH6, MYH7, MYH6.S coding upstream 194747 8558263 ~ 8564996 (+)
CI01000029_08533907_08555317 PAK6 coding upstream 203774 8533907 ~ 8555969 (+)
CI01000029_08915550_08920146 NA coding downstream 153229 8914423 ~ 8920358 (+)
CI01000029_08990637_09003719 NA coding downstream 229363 8990557 ~ 9003779 (+)
CI01000029_09058596_09061088 FKBP3 coding downstream 297402 9058596 ~ 9061323 (+)
CI01000029_09079841_09080368 ARF6.S, ARF6.2, ARF6, ARF6.2.L, ARF6B, ARF6A coding downstream 317799 9078993 ~ 9080635 (+)
CI01000029_09091229_09095666 PELI2 coding downstream 329909 9091103 ~ 9101802 (+)
G155934 NA non-coding upstream 19510 8740021 ~ 8740233 (+)
G155766 NA non-coding upstream 23650 8731853 ~ 8736093 (+)
G155765 NA non-coding upstream 30320 8727663 ~ 8729423 (+)
G155931 NA non-coding upstream 40716 8718800 ~ 8719027 (+)
G155930 NA non-coding upstream 41873 8717554 ~ 8717870 (+)
G155946 NA non-coding downstream 42013 8803207 ~ 8803597 (+)
G155947 NA non-coding downstream 48138 8809332 ~ 8809663 (+)
G155948 NA non-coding downstream 49414 8810608 ~ 8810934 (+)
G155953 NA non-coding downstream 62774 8823968 ~ 8837892 (+)
G155959 NA non-coding downstream 72341 8833535 ~ 8834629 (+)
G155627 NA other upstream 827566 7931480 ~ 7932177 (+)
G155522 NA other upstream 1121909 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 1852311 6905834 ~ 6908633 (+)
G155083 NA other upstream 2269449 6431535 ~ 6490294 (+)
G155079 NA other upstream 2471345 6282685 ~ 6288398 (+)
G156007 NA other downstream 203624 8964818 ~ 9064541 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017764 rps29 coding NC_007131.7 CM002904.2 54079341 ~ 54085949 (+)
tiger barb (Puntius tetrazona) rps29 NA misc NC_056718.1 CM032087.1 26483321 ~ 26560387 (-)