CI01000029_08743604_08749941 (WDR20)


Basic Information

Item Value
gene id CI01000029_08743604_08749941
gene name WDR20
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8740734 ~ 8750337 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_08743604_08749941.mRNA
CTATAAATTCAACCTTTCTAATTTCATCCCTCAGATATACACAATAATAAAAGCCTTATGAGAGTTTATTTAAAGATGTGATTCAGCTTTAATACTGTGCTTTTCTTCTAGCCTATTTATGTATTTAAATCTGTTTATTCTGCCAGTGTTTGTTTTCTTTATGTTTATGTATTTATCTTTTGTGCAATAAAAAGCTCTTTATTGCTGTTTAGCTTTATGCATTAGACATTTATATTTTTAAGATCATGTTTACAAGATGTTTACATGTTTACAACTCAAAAATGAAAAGGAATATGTGACTGAAACACGTTCATACACGTTTAAAAAAGTCATACTTAGTAAAAATATTACATTATCACAGTCAGAAATAAGAATAGTAACTGACCGCTGGAATTTTATCGATTTATTACTTATTTATGACTAGAAGTGACGACCAAACAATAATTGAGTTAAATAAAACTACCCAGCAGGTTGGGCAAACATTTAACCCAATCGCTGGGTTAAAAAAAAAAAAAAACATTCACTGGGTTAAAACAACCCAACCGCTGGGTTAAAGCAACCCATTTGCAGGGTTAAAACAACCCCATCGCTGGGTTAAAACAACCCCATCGCTGGGTTAAAACAACCCAACCGCTGGGTTAAAGCAACTCAACCGCTAGGTTAAAACAACCCCATCTCCGGGTTAAAACAACCCATTTGCTGGGTTAAAACAACCCCATCGCTGGGTTAAAACAACACAACCACTGGGTTAAAACAACCCATTTACTGGGTTAAAGCAACTCAACTGCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCTGGGTTAAAACAACCCATTTGCTGGGTTAAAGGAACTCAACCACTGGGTTAAAACAACCCCATCGCCGGGTTAAAACAACCCAATTGCTGGGTTAAAACAACACAATCACCGGGTTAAAACAACCCAATTGCTAAGCTAAAACAACCCAACAGCTGGGTTAAAACAACATGTGAGAACTTTGACAGCTCGTTTTTAAGCAGAATTTGTATATGCAAAGATCATGTTTGAGAACAGCTGTATATTTTATATTTTCTTCGATGGAATTATACAATTGAAATAGTCGCGAAAAATCAGTTTGACAAACAACCTCGGCAGGATTTTACTTAACTTGCGTGAACGCGCAGCTCACAGTCTCGCGGAGTACGGGGCGCGCGCATGCTCGTGCACTCAGCGGAATGAATACTAATGTTGAAGATGGCGGCGGAGGGAGGTGGGAAGGAGGCGAACGAAATTAAAACTCAATTCACCACACGGGAGGGCGTCTATAAACTCCTGCCGAACTCCGAGTACAGCCGCCCGAACCGGGTGCCGTTCAATTCACAGGGCTCGAACCCGGTCAAAGTCTCTTTCGTGAACGTGAACGACCAGTCCGGTAACGGCGAGAGAATCTGTTTCAATGTGGGCCGGGAGCTTTACTTTTACATTTATAAAGGCGTCAGGAAGGCCGCTGACATGAGCAAACCCATAGACAAGCGGATCTATAAAGGAACGCTTCCCACGTGTCACGACTCCAACGCCCTGACGGCCACGGCGGAGAGCGTCTCACTGTTGGTGGGCTTTTCTGCAGGGCAAGTACAGCTCATTGACCCCATCAAAAAGGAAACCAGCAAACTTTTTAATGAAGACAGACTCATTGACAAGTCTCCGGTGACGTGTTTAAAGTGGGTCCCGGGTTCAGAGAGCCTGTTCTTGGTGGCTCACGCCAGTGGATGTTTGTACCTGTATAACGTGGAGCACACGTGTGGAACGACAGCGCCACATTACCAGCTCCTCAAGCAAGGCGAGAACTACACCGTACACACCGGCAAGAGCAAAACGGCCCGCAATCCTCTCCTCCGCTGGACGGTTGGCGAGGGCGCGGTCAACGAATTCGCCTTCTCGCCGGACGGGAAGTTTCTGGCCTGCGCCGGTCAGGACGGCTTCCTCCGAGTGTTTTGCTTCGACACGGCAGAACTCCAAGGCACCATGAAGAGCTACTTCGGCGGACTCCTGTGCGTGTGCTGGAGCCCCGACGGACGGTACATTGTGACCGGCGGGGAAGACGACCTTGTGACGGTGTGGTCGGTTTCGGACTCTAGGGTCATCGCACGCGGCCGCGGGCACAAGTCGTGGGTGAGCGTCGTGGCGTTCGATCATTGCATCACCAGCGTTCAGGACTGCGAAGCGCCACCGGAGTTCAGCGGAAGCGACGAAGACTTTCAGCAATTCAACGGAACCCGAGAACGGACGAATAGCGGCCAATCCAAACGAAACTCTACCGATGGGCGAAGCCTCAGTGTGACTTATCGCTTTGGCTCGGTCGGTCAGGACACCCAATTGTGCTTGTGGGACCTTACGGAAGACATTCTGTTCCCCTTACCCAGAACTAGGACTCACACGAATGTCATGAGTTGGGAAACTAACGGTAACAGTAGCGTAACCCCGTCAAACTCGCCTTTACCGCGCTCAAACAGTTTGCCGCACTCCTCGGGCAATAGCCCGAACATCCACAAACCCACCAGCATCGTAGACGGTGTGATCGCCGCGGGTGTCGGCAAATTCGCCACGTTGGCTCTACACGAAACGCGCAAGGAACGGCATCAGGAAAAGGACCACAAACGCAATCACAGCATAAGCTACATCAGCAACAAGAGCAGCGAGAAGCTCAACCAGATCATCGGCGCACGCACCGGCAAAACGGACACCACTAAGGCACTGGGAACGACGCTGTGTCCGCGCATGGAGGAAATCCCTCTGCTGGAGCCGCTGGTTTGTAAGAAAATCGCCCACGAGAGACTCACCGTGTTGATCTTCCTCGAGGACTGTCTGGTTACAGCCTGCCAGGAGGGTTTCATTTGCACATGGGCACGGCCTGGAAAAGTGGGCCTTTTGCCTCCCCAAAACCCAGCCAACTCTCCCAGCGGGACGGTCGTATAGCTGCCGTGATCGAGCCGACCGGGACCTTCAAACGCATCATATCAGCTGTGTCACATGTATGTTGTCATGTTTGCCGAGAAACACGTGTTTACTGTTCATCCCGAATCTCAAGAAGCCCGTCAAGCTCATAATTCACCCTAAAATCAACAGTAAGAAAATAAATATTATTTTGCATAAACAAAATGCTGATTTTATGCATTTTTTCATGACAATTTAACACATTTCACCCCCAAATACTTATTACTGTCATGCAATATATTGTGATGTACAACTGTAAGTACATAATAGTATTTGTTCTGAATCTGATTTTAATTGAAAACTAAATATTGTCAGGGTCCAGACAGGATGATTCTTCAACACTAAGAATTGGGGCAAATGTGTGTAATTGTCATGAGA

Function

symbol description
wdr20 Predicted to be located in nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_08743604_08749941.mRNA True 4988 mRNA 0.31 4 8740734 8750337

Neighbor

gene id symbol gene type direction distance location
CI01000029_08654610_08655443 NA coding upstream 84184 8652582 ~ 8656550 (+)
CI01000029_08578097_08583564 SLC25A47A coding upstream 156761 8577815 ~ 8583973 (+)
CI01000029_08558693_08564749 MYH6, MYH7, MYH6.S coding upstream 175738 8558263 ~ 8564996 (+)
CI01000029_08533907_08555317 PAK6 coding upstream 184765 8533907 ~ 8555969 (+)
CI01000029_08506379_08516187 NA coding upstream 224429 8506379 ~ 8516305 (+)
CI01000029_08759743_08761002 GM2581, RPS29, RPS29.S, GM7618, GM7079 coding downstream 9406 8759696 ~ 8761326 (+)
CI01000029_08915550_08920146 NA coding downstream 164086 8914423 ~ 8920358 (+)
CI01000029_08990637_09003719 NA coding downstream 240220 8990557 ~ 9003779 (+)
CI01000029_09058596_09061088 FKBP3 coding downstream 308259 9058596 ~ 9061323 (+)
CI01000029_09079841_09080368 ARF6.S, ARF6.2, ARF6, ARF6.2.L, ARF6B, ARF6A coding downstream 328656 9078993 ~ 9080635 (+)
G155934 NA non-coding upstream 501 8740021 ~ 8740233 (+)
G155766 NA non-coding upstream 4641 8731853 ~ 8736093 (+)
G155765 NA non-coding upstream 11311 8727663 ~ 8729423 (+)
G155931 NA non-coding upstream 21707 8718800 ~ 8719027 (+)
G155930 NA non-coding upstream 22864 8717554 ~ 8717870 (+)
G155946 NA non-coding downstream 52870 8803207 ~ 8803597 (+)
G155947 NA non-coding downstream 58995 8809332 ~ 8809663 (+)
G155948 NA non-coding downstream 60271 8810608 ~ 8810934 (+)
G155953 NA non-coding downstream 73631 8823968 ~ 8837892 (+)
G155627 NA other upstream 808557 7931480 ~ 7932177 (+)
G155522 NA other upstream 1102900 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 1833302 6905834 ~ 6908633 (+)
G155083 NA other upstream 2250440 6431535 ~ 6490294 (+)
G155079 NA other upstream 2452336 6282685 ~ 6288398 (+)
G156007 NA other downstream 214481 8964818 ~ 9064541 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017762 wdr20b coding NC_007131.7 CM002904.2 54036981 ~ 54051196 (+)