G155766


Basic Information

Item Value
gene id G155766
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8731853 ~ 8736093 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU176856
AGGTTTACAAAAAAACAGCTTAAATTAGAAAAGTTCAGAAAATACAATTTTCTGATAACTACATGTAGACACAAACAGATCACTTCGGGATGTGGAGATTGTTTTTTCTTTTTTTTTTTTACAAAAACAAAAAACAAAAAAAAAAAACAATAAATTAAATACATTAACAAATTAGTGTTATTTACACTAAAACTCTTTAGTCAACTTCCTCCATTCTGGAACTGTCATCATCACCCTCCAGAACTGGCATATCTTCATCAGCGGGTTGAGTAATGTCCTCAACGGTAGAGTCATCATCATCAATGCCTGCAAGAGTACAGATTAAATATAATTAAGTCACTTTTTCCTTTTCCTTTTTTTCAATCTTAAAGTCACCATGAAATCAAATTTGACTATTCTAGTTTGCTAATGGAATATTGTAGTATTTATTGTAAATGATTTAACCATGCTAATCATTTTTTTTTTTAAAACAAATTAATGTGCCCTCATAATCGTTAATCAAAGATAATTGTTAATCAAAGATAATCTTACGACGTGTTTACTGGCGCGAGGGCGGGACAACCTGTCACTCACGTGAGATCTCAGCAATAGCAAATGAAACAATCCAATCAATTCCCAATGGACAAAATCAAGTCCCGCCCTACATTTTTTCTTGTTCAAGAAGCCATTTCACTAGGATATATAGTAAAATAAGGACAAAAAGATGATCGCAACTTCTGTTTCATGCCGACATTAAAAATAAAGGTTCCAAAATGGTGTTTTCCCAGCTTTCGCACCGGTAAGTTTTAGGAACTCAGTTACAGGAACTAGCCACCAGGGCGGTCCCCGGAGAACTAAATGTTTAGGAACTTTCCTGGTTGCATTCGCACCGCCAGTAGGAACTCTGAAATAAGCCGTTACTTACGACCTGACGCGCTGGTTGTTAATTTTGACGGTGTGGTGGACTTTTATTTTGACAGCGCTAAGAACAGCTCAGTCAGAGCCTGAGCACACAGCGCTCCCATTCTCTGTGTTCATTAGTTTATGATCTGTTTAACAGTCCTAATACATTATTAGATAGAACTGTTAAACAAAGAAAGTAAACGGTATATGAAAAAGTATTATAGCGTTTGCCGTGTGGTTGATGCCCAATGTTGCTAGCTGAGCAGAAATACATAATCATGTTTCGCTTGGTTGCGTTGTATCTTCTCCATAGCATAAAGGTTGAGAAGTGCCTGGACTTTGGCGTCAGTTTATCTATTGCTGTTTTCCATGTTCGTGGAGTAAATAAATAGGCTATGAACTATGTTACATTCGGCCAATCAGCGTACATTTACTGGTAGTTCCTATGGAGCTGGGTTAGACCCTACTCTGAAGTAGGAGCTAATTTAGTTCCCCTAAAAGGTGTTCCTATAACTAAAATCATTCCAAGTTCCTGCAGTGCGAATACGCCAAAAAGTGGGTACTTCCACCATTAGTTATAGGAACTATGAAAAGGTTCCTCTAGTGCGAAAGCCCCTAGTGATGCCATTGAAGAACCATTTTGGGATTGGTGAATGTTTCTTAAAAGAACCATTTTACTTAGTGTGAAGAACATTTTAATATTCTAAAGAACCTTTAAAACCTTTTGTGCAATGGAACTGTTCCATGGATGTTAAAGGTTCTTCATGGAACCATAAATGCCAATAAAGAACCTTTATTTTTAAGAGTGAGTGAGTGGCTTTTTGATGGGCATTGCCAATGACCAAAGAGCAGGGTGAAATATAATGCTAATAAACGTATCAAACTTACCAAGACCAAGTTTGATCATCCTGTAGATGCGGTTGGCATGTGTTTGTGGGTCTTCCAGGGTGAATCCAGAGGAGAGCAGAGCAGTTTCGAACAGCAGGATGACCAAGTCTTTCACAGCCTTGTCGTTCTTGTCGGCTTCTGCTTTATCTCGGAGGGTCTCAACGATGGGATGGACTGGGTTGATTTCAAGGTGCTTTTTAGCCGTCATGTATCCCATGGTGGAGTTGTCTCTCAGGGCCTGAGACTTCATGATCCTCTCCATGTTGGCCGTCCAGCCGTATGTGCTTGTGACGATGCAGCAAGGTGAAGCCACCAAACGGTTTGAGACAGTGACCTGTTTAGATGCAAATCCAAATATTCTTTATCATTAAATGGTTCTGAAGAGTATGCACTTCAAAATCATAGTCTAGTATGCTAACAGCTTATACCTTCTCAATCTTTTTGTCAAGAATGTCTTTCATGATCTTGCATAAGTTCTCATATTTGGCCTTCAACTCTTCCTGCTTCTTCTTCTCATCCTCGTCCTCGGGAAGCTCCAGACCCTCTTTGGTCACTGATACCAGATTTTTGCCATCGTATTCCTTCAGCTGCTGTACGCAGTACTCATCGATGGGCTCGATCATGTAGATCACCTCCAGACCGGCTTTGCGCAGGCGCTCCACAAAGGCCGAATTGGCCACCTGATCTTTGGTCTCACCTTTGGAGAGTAAGATAGTTTTGAGAATTGTAAGAAAATGGTATCTTTGGGTTAAAATAATGTTTACATTCATTAACCAACTACTAACCAGTGATGTAGTAGATGTGCTTCTGGGTGTCCTTCATGCGAGACACATAGTCCTTGAGGGAAATCATCTCGTCTCCAGAAGCAGATGTGTAGTAGCGAAGCAGCTCAGAGAGTTTTTTGCGGTTCTGGGAGTCCTCATGGATGCCAAGCTAGAATAGAAAAGGACATTTTAGCTTGGCTGTTTTCATACCCCATCTATGAGTTACTCAAAAAGCACACATACCTTGATGTTCTTGGAAAACTGTTCATAAAGCTTCTTGTAGTTGTCTTTGTCCTCGGCAAGTTCAGTGAAGAGCTCCAGACACTTCTTGACCAGGTTCTTGCGGATCACTTTCAGGATCTTGCTCTGTTGAAGCATCTCTCTGGAGATGTTCAGTGGCAGATCCTCAGAGTCCACAACACCCTTAATGAAGTCTGGGAGGAACGTTTAACTCGTTAACAGTTGAACTCTTGTGTCATATCAGTATCCAATGTCTAGGAATCATTCATAATGAACTCTTGAGACACTTACTGAGATATTCTGGAATGAGCTCCTCGCAGTTGTCCATGATAAAGACCCTGCGCACATACAACTTGATGTTGTTTCTTTTTTTCTTGTTCTCGAAAAGGTCAAAGGAGGCTCTTCTGGGTATAAACAGCAGAGCGCGGAACTCCAGCTGGCCCTCAACCGAGAAGTGCTGTAACAACAAGAAGATTGGTGGTCTTCTCAATGAAAAGTCCATCCATTTTTATGTTACATTTCTGACTCAATATTACTACCACCAACCTTGACAGCCAAGTGGTCCTCCCAGTCATTGCTTAAACTCTTGTAGAACTCGCCATACTCCTCATTGGTGATGTCATCGGGGTTACGGGTCCACAGAGGTTTGGTCTTGTTCAGCTCCTGAGCATCAATGTACTTTTCCTTGACCTTCTTCTTCCTCTTGTTCTGGCCATCTTTGGAGTCTTCATCCTCATCAGCCCCCAAGTCCTCAATCTTAGGTTTGTCTTTGTCATCTTCGGCTGGCACCTCCTCCTCCTTTTCTCCCTCTTCAAGGTCAACCTCCTTCTCTCTCTGTTTCTCAATCTGCAAGATATTTTTATGTTTTATAATGTGTGCACTGGAAGCATTGGAAGGTTGACAGTCCAGGTACCAAAGTAGAGGCACTTACAAAGAGCGTGATAGGGTAACCGATGAACTGAGAGTGCTTCTTCACAACTTCTTTGATGCGCTTCTCCTCAACATATTCAGACTGATCCTCTTTAAGGTGGAGAATGACTTTGGTGCCACGTCCAAGGGGTTGACCAGAGTCTGGTTTAACTGTGAAGGAACCACCAGCAGCAGACTCCCAGATGTACTGCTCGTCATCGTTGTGTTTGGTGATGACTGTGACTTTCTCGGCCACCAGGTAGGCGGAATAGAAACCCACACCAAACTGACCAATCATTGAAATGTCTGCTCCCGCCTGCAGGGCCTCCATGAAGGCCTTTGTACCGGATTTGGCAATGGTGCCCAGGTTATTGATGAGGTCAGCTTTGGTCATGCCAATGCCGCTATCAATGATTGTGAGAGTGCGCTCTTTCTGATCAGGGATGAGTTCAATCTTCAAGTCCTTGCATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU176856 True 4154 lncRNA 0.42 2 8731853 8736093

Neighbor

gene id symbol gene type direction distance location
CI01000029_08654610_08655443 NA coding upstream 75303 8652582 ~ 8656550 (+)
CI01000029_08578097_08583564 SLC25A47A coding upstream 147880 8577815 ~ 8583973 (+)
CI01000029_08558693_08564749 MYH6, MYH7, MYH6.S coding upstream 166857 8558263 ~ 8564996 (+)
CI01000029_08533907_08555317 PAK6 coding upstream 175884 8533907 ~ 8555969 (+)
CI01000029_08506379_08516187 NA coding upstream 215548 8506379 ~ 8516305 (+)
CI01000029_08743604_08749941 WDR20 coding downstream 4641 8740734 ~ 8750337 (+)
CI01000029_08759743_08761002 GM2581, RPS29, RPS29.S, GM7618, GM7079 coding downstream 23650 8759696 ~ 8761326 (+)
CI01000029_08915550_08920146 NA coding downstream 178330 8914423 ~ 8920358 (+)
CI01000029_08990637_09003719 NA coding downstream 254464 8990557 ~ 9003779 (+)
CI01000029_09058596_09061088 FKBP3 coding downstream 322503 9058596 ~ 9061323 (+)
G155765 NA non-coding upstream 2430 8727663 ~ 8729423 (+)
G155931 NA non-coding upstream 12826 8718800 ~ 8719027 (+)
G155930 NA non-coding upstream 13983 8717554 ~ 8717870 (+)
G155868 NA non-coding upstream 29277 8605257 ~ 8702576 (+)
G155852 NA non-coding upstream 58353 8672979 ~ 8673500 (+)
G155934 NA non-coding downstream 3928 8740021 ~ 8740233 (+)
G155946 NA non-coding downstream 67114 8803207 ~ 8803597 (+)
G155947 NA non-coding downstream 73239 8809332 ~ 8809663 (+)
G155948 NA non-coding downstream 74515 8810608 ~ 8810934 (+)
G155627 NA other upstream 799676 7931480 ~ 7932177 (+)
G155522 NA other upstream 1094019 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 1824421 6905834 ~ 6908633 (+)
G155083 NA other upstream 2241559 6431535 ~ 6490294 (+)
G155079 NA other upstream 2443455 6282685 ~ 6288398 (+)
G156007 NA other downstream 228725 8964818 ~ 9064541 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G184623 NA non-coding NC_048566.1 CM023220.2 75254691 ~ 75256783 (-)
bowfin (Amia calva) G149869 LOC105909576,LOC107704376 non-coding CM030141.1 CM030141.1 12833539 ~ 12841673 (+)
tiger barb (Puntius tetrazona) G141824 hsp90aa1.1,LOC107704377,LOC107564585,LOC107730601,LOC103369948,LOC108231827 non-coding NC_056718.1 CM032087.1 25609303 ~ 25611845 (+)