Gene
RNA
| Item | Value |
|---|---|
| gene id | G155765 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 8727663 ~ 8729423 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU176855 | True | 1729 | lncRNA | 0.37 | 2 | 8727663 | 8729423 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000029_08654610_08655443 | NA | coding | upstream | 71113 | 8652582 ~ 8656550 (+) |
| CI01000029_08578097_08583564 | SLC25A47A | coding | upstream | 143690 | 8577815 ~ 8583973 (+) |
| CI01000029_08558693_08564749 | MYH6, MYH7, MYH6.S | coding | upstream | 162667 | 8558263 ~ 8564996 (+) |
| CI01000029_08533907_08555317 | PAK6 | coding | upstream | 171694 | 8533907 ~ 8555969 (+) |
| CI01000029_08506379_08516187 | NA | coding | upstream | 211358 | 8506379 ~ 8516305 (+) |
| CI01000029_08743604_08749941 | WDR20 | coding | downstream | 11311 | 8740734 ~ 8750337 (+) |
| CI01000029_08759743_08761002 | GM2581, RPS29, RPS29.S, GM7618, GM7079 | coding | downstream | 30320 | 8759696 ~ 8761326 (+) |
| CI01000029_08915550_08920146 | NA | coding | downstream | 185000 | 8914423 ~ 8920358 (+) |
| CI01000029_08990637_09003719 | NA | coding | downstream | 261134 | 8990557 ~ 9003779 (+) |
| CI01000029_09058596_09061088 | FKBP3 | coding | downstream | 329173 | 9058596 ~ 9061323 (+) |
| G155931 | NA | non-coding | upstream | 8636 | 8718800 ~ 8719027 (+) |
| G155930 | NA | non-coding | upstream | 9793 | 8717554 ~ 8717870 (+) |
| G155868 | NA | non-coding | upstream | 25087 | 8605257 ~ 8702576 (+) |
| G155852 | NA | non-coding | upstream | 54163 | 8672979 ~ 8673500 (+) |
| G155867 | NA | non-coding | upstream | 122605 | 8604832 ~ 8605058 (+) |
| G155766 | NA | non-coding | downstream | 2430 | 8731853 ~ 8736093 (+) |
| G155934 | NA | non-coding | downstream | 10598 | 8740021 ~ 8740233 (+) |
| G155946 | NA | non-coding | downstream | 73784 | 8803207 ~ 8803597 (+) |
| G155947 | NA | non-coding | downstream | 79909 | 8809332 ~ 8809663 (+) |
| G155627 | NA | other | upstream | 795486 | 7931480 ~ 7932177 (+) |
| G155522 | NA | other | upstream | 1089829 | 7634833 ~ 7637834 (+) |
| CI01000029_06906861_06907157 | NA | other | upstream | 1820231 | 6905834 ~ 6908633 (+) |
| G155083 | NA | other | upstream | 2237369 | 6431535 ~ 6490294 (+) |
| G155079 | NA | other | upstream | 2439265 | 6282685 ~ 6288398 (+) |
| G156007 | NA | other | downstream | 235395 | 8964818 ~ 9064541 (+) |
