CI01000030_10944729_10953518 (CERS1)


Basic Information

Item Value
gene id CI01000030_10944729_10953518
gene name CERS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10944729 ~ 10953518 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_10944729_10953518.mRNA
ATGGACACCAATCACATGGATGATGGTTCCTCCAGCGATGGCACGGAGATGGAGATCATGCCTGGCTATATAGAGCTCATCACCAGAGCATATTCAGTGATTTTCAGTGCCTTTAGAGACTGTAAAGACTGCGGACTGGAACTGTCCAGTAAAACCTTGCTGGATCATGCCTACATAACCTGGATGGAGATCTTCATGTTCTTCATGTGCGCGGTCATGTGGACGAAGGTGCGCAGGGGGCTGGCCGTGTACATCTTTGAGGTAAATATACTGCAGAAGCCACAGTTGATGCAAATACAACTAATGCCGGAGAGCGCGTGGAAGCTGGTCTTCTACACAATGTCATGGTCATACAGCACCTACCTTTTGTTTTTCACTAGTTATTCCTTCTTTCAAAACCCTCCGTCTGTGTTTTACGACTGGAAGAGCGGGATGTCGGTACCCACCGATATTGCAATAGCTTACCTTATCCAGGGCAGCTTCTACGGCCATTCCATATATGCTACGGTCTACATGGACGCATGGAGGAAGGACTCTCTTGTCATGGTGGTGCATCACTTCATCACTCTGGCCCTGATCACATTCTCCTATGCCTTTAGATACCACAACATTGGCATTCTTGTCCTCTTTCTTCACGACATCAATGACATTCAGTTGGAATTCACCAAGGTCAACGTTTATTTCAAGATCCGGGGAGGGAAAGAGTACTTCATCAACGATGTCCTGTCCAACATGGGTGCCGTCAGCTTTAGCATCACATGGTTTTGGTTCCGTTTGTACTGGTTCCCCCTTAAAGTGCTGTGGGCCTCCTGCGTCACCAGCATCCAGTCGGTTCCCAACATTCCTTTCTACTTCTTCTTCAACACACTCCTGTTTGCCCTGCTCCTCATGAATATCTACTGGTTCCTGTTCATCGTGCTGTTTGTGGCGAAGGTCCTGACGGGCCAGATGAAGGAAGTAAACGATGTCCGGGAGTACGAGGAAGATGACTTAAAGGAGAGAACAGACACTAATGATCAGATGTCTACTGAAGGG

Function

symbol description
cers1 Predicted to enable sphingosine N-acyltransferase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including intermediate cell mass of mesoderm; intestine; nervous system; otic vesicle; and trigeminal neural crest. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 8. Orthologous to human CERS1 (ceramide synthase 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04710 CERS1, LASS1; sphingoid base N-stearoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_10944729_10953518.mRNA True 1035 mRNA 0.48 6 10944729 10953518

Neighbor

gene id symbol gene type direction distance location
CI01000030_10919162_10925437 NA coding downstream 19292 10919046 ~ 10925437 (-)
CI01000030_10886966_10901232 NA coding downstream 40265 10886594 ~ 10904464 (-)
CI01000030_10865700_10868055 NA coding downstream 75725 10865264 ~ 10869004 (-)
CI01000030_10797691_10834282 MYO9B coding downstream 107802 10797458 ~ 10836927 (-)
CI01000030_10771736_10772503 NA coding downstream 171949 10771543 ~ 10772780 (-)
CI01000030_10971452_10974167 MYDGF coding upstream 17339 10970857 ~ 10974167 (-)
CI01000030_10977260_10979944 NA coding upstream 23706 10977224 ~ 10979944 (-)
CI01000030_10982784_10985399 MIBP coding upstream 28997 10982515 ~ 10985955 (-)
CI01000030_10987288_10989182 ATCAY, ATCAYA coding upstream 32773 10986291 ~ 10989624 (-)
CI01000030_11059372_11062362 NA coding upstream 105762 11059280 ~ 11062577 (-)
G164370 NA non-coding downstream 20082 10924310 ~ 10924647 (-)
G164368 NA non-coding downstream 24466 10920004 ~ 10920263 (-)
G164364 NA non-coding downstream 34312 10910164 ~ 10910417 (-)
G164363 NA non-coding downstream 35796 10908547 ~ 10908933 (-)
G164362 NA non-coding downstream 37989 10906509 ~ 10906740 (-)
G163694 NA non-coding upstream 63926 11017444 ~ 11021899 (-)
G163858 NA non-coding upstream 74598 11028116 ~ 11034985 (-)
G163840 NA non-coding upstream 133030 11086548 ~ 11102629 (-)
G163678 NA non-coding upstream 134090 11087608 ~ 11189504 (-)
G164397 NA non-coding upstream 221999 11175517 ~ 11176036 (-)
CI01000030_10343879_10366274 NA other downstream 578374 10343865 ~ 10366508 (-)
CI01000030_10103451_10131419 NA other downstream 823009 10102944 ~ 10133765 (-)
G164071 NA other downstream 1468465 9475188 ~ 9476264 (-)
CI01000030_11494792_11495184 CTXN1 other upstream 540820 11494183 ~ 11495854 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location