CI01000033_00932452_00979938 (TBCD)


Basic Information

Item Value
gene id CI01000033_00932452_00979938
gene name TBCD
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000033
NCBI id null
chromosome length 1934898
location 932452 ~ 979938 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000033_00932452_00979938.mRNA
ATGTCGGTGATGGAGGGCGTGTGTAATGGAGAGGAGTCTGAGCTGACGGTTCAGGCGTGTGTGCTGTCTGAGTTCACTGAGAGCGCAGAGGCTCGAGCTCTCTTCAGCAGCCTGCCGGACACTCATCACGACACGGCCAGCAGAGAGGCCATCATCGAGAAATTTGTGGTTATGATGGATCGTTACCAGGAGCAGCCACATCTTCTGGACCCTCACTTGGAGTGGATGCTGAACATGCTGTTAGAGATGATCCGCAATGAGAAGTCGCCACCTCTTCTGGTCCATCTCTGTTTCAAATTCCTCTATATCATCTCAAAGGCAAGCCGAGGCTACAAGATTTTCATGCAGCTGTTCCCCCATGAGGTGTCGGACGTTCAGCCAGTTCTGGACCTTTTATGCAGACAGGACCAAAAAGACACTGAGACCTGGGAAACACGCTACATACTCCTCCTCTGGCTCTCCATGACATGTCTCATTCCCTTTGACTTGTCCCGTCTGGACGGCCACCTGTCTGCTGACTCCGGGCTGAACAGAGAGACCATAATGGATCGTATTTTGGCTGTTGCCAAGTCCTTTCTCACAGTCAGTGACAAATCTCGAGATGCTGCATCAGTGCTTGTATCAAAGTTTGTGACCCGTCCAGATGTGAAGCAGAAGCGTCTGGGTGATTTTCTGGACTGGTGTCTGACCACCATCTCTCAGACCAGTGAAATGTCCATGGAGGGAACTGTGGCCCTTGATGGAGCTTTGCAGTCCCTGGCCCAGCTCTTCAAGCATGGGAAACGTGATGACTTCCTGCAGTATGCCCCCCCAGTGCTTCAGTGCCTAAACCAGAAGAAAATAGCTGAAAGTAACCAGGCCACGTTGCGTAAGCTGGGAATAAAAGTTGTCCAGAGACTTGGCTTGACCTGTCTAAAACCACGTTTGGCCAAATGGAGATACCAGAGAGGAAGTCGGTCACTCGCAGTGAACCTGGCCCTGTCTTCTGCCACTGGAGGTGTAGAGGATACAAAACCTGATCTAGAGTCTGTCAGTCAAGAGGAAGACTATGACATCCCTCAGGAAGTAGAGAATGTCATTGAACAACTGTTGGTGGGACTGAAAGACAAAGAGACAATAGTGCGATGGTCTGCTGCAAAGGGGATTGGAAGGGTGACTGGTAGACTACCCAAAGAGCTTGCCGATGAAGTGGTTGAATCTGTTTTAGAGTGTTTCAGTTTCCAGGAAACAGATAATGCCTGGCATGGGGGCTGCCTGGCTCTTGCAGAGCTAGGCCGGAGAGGACTCCTGCTTCCTTCACGTCTTTCAGATGTGGTTCCTCTGGTTCTAAAAGCTCTGATATATGACGAAAAAAGGGGAGCATGCAGTTTGGGATCAAATGTACGTGATGCAGCCTGCTACGTGTGCTGGGCTTTTGCCCGTGCCTATGAGCCAAGCGAACTAAAGCCTTACGTCAACCAGATTGCCAGTGCGCTGGTCATCGCAACTGTATTTGACAGGAACATCACCTGCAGAAAGGCTGCGTCTGCTGCTTTCCAAGAGAATGTGGGCAGACAGGGCACCTTCCCCCATGGCATAGACATTGTCACAGCGGCGGACTACTTCACGGTCGGTAACCTGAATAACTGCTACTTGACTATCAGTGTCTACATCGCTGGTTTTGAGGAATACACCAAACCCTTAATTGACCATTTGGTGGCTATGAAAATCAATCACTGGGATGGGGTGATCAGAGAGCTGGCCACAAAAGCATTGCACAATCTAACTGTCAAGTCTCCTGAATACATGGCCAACACAGTTTTACCCCAGCTGCTGCCCATGGCAACAGGGATGGATTTACACCGCCGTCACGGCGCTATCCTGGCCTGCGCTGAGATAACTCATGCTCTCTATGAGCTGGCCACCCAGAACAATAGGTCAGTGACTGACTTTCTGTCCTCTGACACCATTGAAGGCCTTAAAGACATTCACCAAAAGGTCTGCAGAATTATTACTGTTTTTTTTACACCCTTTTCCTTTGTCTTTTTTGTTTTTTCAGTCTGTGGCCTCATTGAAAAGCTCTCTCTCTCCAAGATGCCTTTTAAAGATGACCCAGTTATCACTGGTTGGCAGTGGCTAATAGATGACAGCTTGAAGAACCTTCACCTGTTCTCCAGCGGGGCCAGACGGGGTATACAGGATGCCGCAGTCTCAGCATTGGCAGCGTTGTGTCAGCAGTATTATCAGGTTGAACCTGGAGTAGCTGACCTGAAAATGCAAGAACAGCTGGTTAGTCAATACCTGTTGGCCCTGGAGAGTCCCGAGGTTCTGACACGCTGTGGCTGCGCTCTCGCCTTGGGCTCGCTGCCTCCATTTATGATCCATGGCAAACTACAGCAGATCTTGCCTGGGCTCCAGGCTGCCTGCAGAGTTGCGCAGAAACAGGAGAGTCGAACAGAAGCCAGGAGGGATGCGGCCACAGCCATGTCTCAGGTGTGTGTAGCTGTAGGAGTGTGTGCGCAAGGAAGTCCGGACCGCGTCCTGTGTGAGGGCAACATAAGGCCTGTGTATGAAGCCTTGCTGGGCTGTATGAACGACTACAGCACGGACAGCAGAGGGGACGTAGGGGCCTGGGTGAGGGCGGCAGCAATGAGCAGTCTCATGGACGTGACCCTGCTGGTGGTGGCGTCTGCTCCAGAGCTCCTCTCCTCTGACCTTGTTCAGCGTATGATGTGCTGCCTGGCCCAGCAGGCTGCAGAGAAGATCGACCGATACCGAGCCCATGCTGGAACCGTTTTCCTGCGTCTGCTCCATAGCACAGAGCCTGCAATACCTCACATTCCCCACCGGGAGGAGCTACTGAGCATCTTCCCTCCAGAGAAGGGAAAGTCCCTCAACTGGAACGCCGCATCACAAGCCTTTCCTCACATCATGCAGCTGCTGCGTCTGCCTCAGTACCAGTACCACACGCTCCTGGGCCTCTCCGTGTCTGTGGGTGGCCTCACCGAATCTACAGTGCGTTTTTCCTCTCAGTCTTTATTCGAGTACCTGAAGGGCATTCAGCAAGATGCCACAGCGCTTCAGCAGTTTGGAGACGCATTGTTACGCATCTTCAGAGATAACCTGCGCAATGACAGGGTTTCTGTACCTTTGCTGAAGATGGTGGACCAAATTCTCGCTAACGGCTGTTTTGAACTCTTCACCAGCGAGGAGAGTCATCCTTTTTGCGTAGAGCTGCTGTCGCTCTGTAAGGAGGAAATCAAGAAGTCTAAGGATGTCCAGAAGTTGTTGTCATGTATAGCTGTGTTCTGTGGAATGGTGCAGTTCCAGGGGGATGTGAGGAAGAATGTCTTGGTGCAGCTGTTGATTTTGCTCTGTCACCCCTTCCCTGTGATCAGGAAGACCACTGCCAGCCAGGTATACGAGATGCTCTTGACCTACGATGATGTCATTGACGATGATCAAGTGCTGGCTGATGTCATGGCCTCACTTAGTGACACTAATTGGGAAAGTGACATCGCTACTGTGCGGACCCACAGGAATCAGCTCTGCGACTGGTTGGGAGTGCCAAGGCCGACTCTGTTAGCCAAGGTAACACATTTA

Function

symbol description
tbcd Predicted to enable GTPase activator activity and beta-tubulin binding activity. Acts upstream of or within brain development and retina layer formation. Predicted to be active in lateral plasma membrane. Orthologous to human TBCD (tubulin folding cofactor D).

GO:

id name namespace
GO:0007021 tubulin complex assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000033_00932452_00979938.mRNA True 3582 mRNA 0.51 36 932452 979938

Neighbor

gene id symbol gene type direction distance location
CI01000033_00745197_00770385 NA coding upstream 161718 745129 ~ 770734 (+)
CI01000033_00715688_00732487 NA coding upstream 199739 715096 ~ 732713 (+)
CI01000033_00702445_00711580 NA coding upstream 220559 702263 ~ 711893 (+)
CI01000033_00523275_00559791 PPAP2D coding upstream 372661 523275 ~ 559791 (+)
CI01000033_00497624_00498442 NA coding upstream 433973 497624 ~ 498479 (+)
CI01000033_01040686_01047701 METRNL coding downstream 60748 1040686 ~ 1048231 (+)
CI01000033_01072144_01081273 NA coding downstream 92071 1072009 ~ 1081619 (+)
CI01000033_01103460_01104059 NA coding downstream 123522 1103460 ~ 1104272 (+)
CI01000033_01178655_01186085 NA coding downstream 198455 1178393 ~ 1186146 (+)
CI01000033_01208922_01226195 HS3ST3A1, HS3ST3B1B, HS3ST3B1, HS3ST3B1A coding downstream 228693 1208631 ~ 1226246 (+)
G168347 NA non-coding upstream 8291 923842 ~ 924161 (+)
G168339 NA non-coding upstream 24995 907193 ~ 907457 (+)
G168338 NA non-coding upstream 25737 906484 ~ 906715 (+)
G168295 NA non-coding upstream 87611 844574 ~ 844841 (+)
G168282 NA non-coding upstream 100355 831844 ~ 832097 (+)
G168401 NA non-coding downstream 119238 1099176 ~ 1099724 (+)
G168453 NA non-coding downstream 183419 1163357 ~ 1164632 (+)
G168466 NA non-coding downstream 206849 1186787 ~ 1187089 (+)
G168467 NA non-coding downstream 208007 1187945 ~ 1188151 (+)
G168473 NA non-coding downstream 222407 1202345 ~ 1202589 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location