G168401


Basic Information

Item Value
gene id G168401
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000033
NCBI id null
chromosome length 1934898
location 1099176 ~ 1099724 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU191286
ACACATAATTTGCTTGAAATTAAGTGGCTGTACAGAGTCAAATGATAAAAAGGGCAAACTATAAATTGAATAAGTTATTTTGCTTGTAAAAACTGCTTTTTGTTGAACACAATAGTGTTGGGCATATTCCTTAGAGACTTAAAGGCACAATATGTAAGATTTTTTAATTAAAATATCCAAAAACCACTAGAATAATGTTATGTATTTTGTTGACTTGTGTACTTAAATTTTTCCCAAATGTTTTCAAGAATGTTTAAATCCAGAGAAATAAACAATTTTAACCAGGACACGGACTGTGTCCGTGCGTCGCCTATCAATGACATTATACCCATGTTACACTCGATTTACTTATTTTGTAGAAACCATGGACACACCAACGACGCTTTAATATAGTTGCAAGAAAAAGTATGTGAACCACTTGCAGAATCTGTGAAAATGTTAATAATTTTAACATTTGGAATTTGAAGATCAAGGTAAATTGTATTTAATTTGTCTTCCGGGAAACATGTAAGTATCTTCTGTTGCTTCCGAAGGGCAGTACTAAAAAAA

Function

NR:

description
BTB/POZ domain-containing protein KCTD12

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU191286 True 549 lncRNA 0.32 1 1099176 1099724

Neighbor

gene id symbol gene type direction distance location
CI01000033_01072144_01081273 NA coding upstream 17557 1072009 ~ 1081619 (+)
CI01000033_01040686_01047701 METRNL coding upstream 50945 1040686 ~ 1048231 (+)
CI01000033_00932452_00979938 TBCD coding upstream 119238 932452 ~ 979938 (+)
CI01000033_00745197_00770385 NA coding upstream 328442 745129 ~ 770734 (+)
CI01000033_00715688_00732487 NA coding upstream 366463 715096 ~ 732713 (+)
CI01000033_01103460_01104059 NA coding downstream 3736 1103460 ~ 1104272 (+)
CI01000033_01178655_01186085 NA coding downstream 78669 1178393 ~ 1186146 (+)
CI01000033_01208922_01226195 HS3ST3A1, HS3ST3B1B, HS3ST3B1, HS3ST3B1A coding downstream 108907 1208631 ~ 1226246 (+)
CI01000033_01281864_01292221 NA coding downstream 182140 1281864 ~ 1292226 (+)
CI01000033_01351073_01357901 CRB3A, CRB3 coding downstream 250811 1350535 ~ 1361048 (+)
G168347 NA non-coding upstream 175015 923842 ~ 924161 (+)
G168339 NA non-coding upstream 191719 907193 ~ 907457 (+)
G168338 NA non-coding upstream 192461 906484 ~ 906715 (+)
G168295 NA non-coding upstream 254335 844574 ~ 844841 (+)
G168282 NA non-coding upstream 267079 831844 ~ 832097 (+)
G168453 NA non-coding downstream 63633 1163357 ~ 1164632 (+)
G168466 NA non-coding downstream 87063 1186787 ~ 1187089 (+)
G168467 NA non-coding downstream 88221 1187945 ~ 1188151 (+)
G168473 NA non-coding downstream 102621 1202345 ~ 1202589 (+)
G168474 NA non-coding downstream 108534 1208258 ~ 1208523 (+)

Expression


Co-expression Network