CI01000034_01621979_01623991 (HOXB2, HOXB2A)


Basic Information

Item Value
gene id CI01000034_01621979_01623991
gene name HOXB2, HOXB2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1621789 ~ 1624069 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_01621979_01623991.mRNA
AAATAAATCCTAGCTTTTTGGATGTTATTTTTTGCGTATGTTGGTGTCGCTGGACGCCCTTTTTGCCCAGGCGAAGCGATGAATTTTGAATTTGAGAGGGAGATTGGGTTCATCAACAGCCAGCCTTCCCTTGCAGAGTGCCTGACGTCTTTCCCCGCTGTCCTGGAGTCATTTCAAACTTCATCAATCAAGGACTCGACAGCAATTCCACCTCCTTTCGAGCACACCATCCCTAGTCTGAGTCCCTGCACAGGCAACCAGGCGCGACCGAGGAGCCAAAAGCGAACTGCCTCCAATGGCCTCCAGCTCCGGACACAAACAGCACCGCCGACGCAGCACCAGCAAGGCCCGGCCCCGCTGTCGGGTGGTGCACCCCTGGCCCACGAGTTCCCATGGATGAAAGAGAAAAAATCCTCGAAGAAGTGCCCCAAGCCCGGAGCCACTGCTGCTGCAGCAGCAGCCTCCCCTTCTCAGGCATCCTCCGGCTACACAACCGCGGGACTAGAGTCCCCGACAGAGGCTCAAGGTGGACTGGATAATGGTAGCGGTTCACGGAGGCTGAGGACCGCATACACCAACACGCAGCTACTTGAACTGGAGAAGGAGTTTCACTTTAACAAATACCTCTGTCGGCCCCGGCGCGTTGAAATAGCAGCACTTCTGGATCTAACCGAGCGCCAAGTCAAAGTGTGGTTTCAAAATCGACGCATGAAGCACAAACGGCAAACTACGCACCACCGGGACGGGCAAGAAGGCGAGCCCAGCGGTTTCGAGCTCCTGGAGGGAACCGACGCTGCTTCACCGTATTCGAGCCAATCTGTGGAAGTATCTGGTTCTGGCTCTGGTTCGGCCGCAGCCTCCGAGAGTGAGACGTGCCCGACAACTGCCTCCTACACGAACAGTGCGGACAAAAGCCAGCCCACGCCTGAAGAGGGCCAGGCGAACCAGCCGGAGCCTGCATCTGTTCCTGACACAGCGGTTCACTCCCCCCCGTATCCAACGCCTACTGCAGATAACCCCACTACAATGGCTGAGGGCCGAGCAGCTGGGCCGGAGCATTCGTTCACAGAGCCGCAGGATGCCACCTCTCTACCCGATTTGAATTTCTTTTCGACGGACTCCTGCCTACAGATTTCGGACGCTTTATCGCCGAGTTTGCAGAGCTCACTAGACAGTCCAGTTGACTTTTCCGAGGAAGATTTTGACTTGTTTACGAGCACCCTTTGTACTATAGATTTGCAACATTTACAGTTCTGAACAAAAATGACATCAAAACGCATACGAGAACAATCGAACTACATCTTATTGCAGTGTCATGAATGCTTTTCGACCGCAACATTCCTATAATAAGACAGAAAAAGAGTGAAAAGAAACACTTACCTAAAGAGTTCTTTTTAAAAGAAAGAAAAACAAAAAAGGCGTGAATCAAAGCCTACACGGAAATAAA

Function

symbol description
hoxb2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain; hindbrain neural keel; hindbrain neural plate; neural crest; and pharyngeal arch. Orthologous to human HOXB2 (homeobox B2).
hoxb2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleoplasm.

NR:

description
Hoxb2a protein

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09302 HOX_2; homeobox protein HoxA/B2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_01621979_01623991.mRNA True 1447 mRNA 0.53 2 1621789 1624069

Neighbor

gene id symbol gene type direction distance location
CI01000034_01603228_01604932 HOXB1A coding downstream 16359 1602434 ~ 1605430 (-)
CI01000034_01498024_01498299 NA coding downstream 121953 1497080 ~ 1499836 (-)
CI01000034_01398718_01404884 CBX1A coding downstream 216905 1398718 ~ 1404884 (-)
CI01000034_01323481_01381800 COPZ2 coding downstream 238317 1323378 ~ 1383472 (-)
CI01000034_01312431_01312780 PRR15LA coding downstream 309009 1311529 ~ 1312780 (-)
CI01000034_01625293_01629938 HOXB3AA, HOXB3A, HOXB3 coding upstream 631 1624700 ~ 1631372 (-)
CI01000034_01648924_01649935 NA coding upstream 24829 1648898 ~ 1650403 (-)
CI01000034_01652735_01654473 HOXB4, HOXB4A, HOXB4AB, HOXB4AA coding upstream 28208 1652277 ~ 1655606 (-)
CI01000034_01666303_01667765 HOXB5A, HOXB5AA, HOXB5 coding upstream 41995 1666064 ~ 1667900 (-)
CI01000034_01670204_01671915 HOXB6AA, HOXB6A, HOXB6AB, HOXB6 coding upstream 45834 1669903 ~ 1671935 (-)
G171631 NA non-coding downstream 219877 1400324 ~ 1401912 (-)
G171582 NA non-coding downstream 373436 1248143 ~ 1248353 (-)
G171572 NA non-coding downstream 423519 1197978 ~ 1198270 (-)
G171405 NA non-coding downstream 494146 1126485 ~ 1127643 (-)
G171549 NA non-coding downstream 499070 1122417 ~ 1122719 (-)
G171704 NA non-coding upstream 86609 1710678 ~ 1710957 (-)
G171712 NA non-coding upstream 116575 1740644 ~ 1741140 (-)
G171724 NA non-coding upstream 140432 1764501 ~ 1768078 (-)
G171731 NA non-coding upstream 156777 1780846 ~ 1781056 (-)
G171751 NA non-coding upstream 203527 1827596 ~ 1830627 (-)
CI01000034_01062505_01083413 NA other downstream 544567 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1037506 571856 ~ 577775 (-)
G171229 NA other downstream 1354543 229404 ~ 267246 (-)
G171755 NA other upstream 240049 1864118 ~ 1866373 (-)
G171835 NA other upstream 817752 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 885744 2510061 ~ 2511521 (-)
G172016 NA other upstream 1610894 3234963 ~ 3236615 (-)
G172151 NA other upstream 1767444 3391144 ~ 3451802 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025312 hoxb2a coding NC_007114.7 CM002887.2 23752150 ~ 23754831 (+)
bowfin (Amia calva) AMCG00016664 hoxb2 coding CM030122.1 CM030122.1 27210523 ~ 27212922 (-)